View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17144_low_19 (Length: 227)
Name: NF17144_low_19
Description: NF17144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17144_low_19 |
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| [»] chr1 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2732960 - 2732735
Alignment:
| Q |
1 |
caagtcataagggactctcagttggtgattaaacagattatcggggaatacaaatgcttgaatgtttgtcaatgcaattgtttaacatgtcccgacaatc |
100 |
Q |
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| T |
2732960 |
caagtcataagggactctcagttggtgattaaacaaattatcggggaatacaaatgcttgaatgtttgtcaatgcaattgtttaacatgtcccgacaatc |
2732861 |
T |
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| Q |
101 |
cttggggtaaaaggaaacacctcttgatcttacacataagaaagacttttattgttccacttcaatttttgctnnnnnnnnngacacataaattacacat |
200 |
Q |
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| T |
2732860 |
cttggggtacaaggaaacacctcttgatcttacacatgagaaagacttttgttgttccacttcaatttctg-ttaaaaaaaagacacagaaattacacat |
2732762 |
T |
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| Q |
201 |
ttaacttcaacgatagctaactaccat |
227 |
Q |
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| T |
2732761 |
ttaacttcaacgatagctaactaccat |
2732735 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 28738725 - 28738762
Alignment:
| Q |
190 |
aaattacacatttaacttcaacgatagctaactaccat |
227 |
Q |
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| T |
28738725 |
aaattacacatttaacctcaacgatagctaactaccat |
28738762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 10228653 - 10228620
Alignment:
| Q |
191 |
aattacacatttaacttcaacgatagctaactac |
224 |
Q |
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| T |
10228653 |
aattacacatttaacctcaacgatagctaactac |
10228620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 56061765 - 56061728
Alignment:
| Q |
190 |
aaattacacatttaacttcaacgatagctaactaccat |
227 |
Q |
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||||| ||||||||||||||||||||||||| |||||| |
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| T |
56061765 |
aaatttcacatttaacttcaacgatagctaattaccat |
56061728 |
T |
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