View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17144_low_3 (Length: 441)
Name: NF17144_low_3
Description: NF17144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17144_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 34679119 - 34678700
Alignment:
| Q |
18 |
attaattcattttctaattttaattgaacaatctttccaactagtaaaaaataaaattaaactt-gattaaatagatgctttattgcgctttcaatctcc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34679119 |
attaattcattttctaattttaattgaacaatctttccaactagtaaaaaataaaattaaactttgattaaatagatgctttattgcgctttcaatctcc |
34679020 |
T |
|
| Q |
117 |
cgcaattgtgaaattttgatttcatgtgtttcaattgtgtggatgatgtctcctagatatcacaattgttaatatcatctttctctccatccattaatca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34679019 |
cgcaattgtgaaattttgatttcatgtgtttcaattgtgtggatgatgtctcctagatatcacaattgttaatatcatctttctctccatccattaatca |
34678920 |
T |
|
| Q |
217 |
tattgaagtacttgttcaaaaattaatcatattggagtaattgttaatgctaaaagccaaaatcgtcg----ttgaatgaagaataaataaaagaaggaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34678919 |
tattgaagtacttgttcaaaaattaatcatattggagtaattgttaatgctaaaagccaaaatcgtcgttaattgaatgaagaataaataaaagaaggaa |
34678820 |
T |
|
| Q |
313 |
aaaatttaatcgatatttaattacactcaccattccaaaaacttttccagcatgcacttgaagtttaggactatcttgtactgcagctgagtccttaaga |
412 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34678819 |
aaaattt-atcgatatttaattacactcaccattccaaaaacttttccagcatggacttgaagtttaggactatcttgtactccagctgagtccttaaga |
34678721 |
T |
|
| Q |
413 |
aaagagaacattccctttgct |
433 |
Q |
| |
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||||||||||| ||||||||| |
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| T |
34678720 |
aaagagaacataccctttgct |
34678700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 34650230 - 34650057
Alignment:
| Q |
22 |
attcattttctaattttaattgaacaatctttccaactagtaaaaaataaaattaaacttgattaaatagatgctttattgcgctttcaatctcccgcaa |
121 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| ||| ||| | |||||| | ||||||||| ||| |||||||||||| |||||| |||| ||| |
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| T |
34650230 |
attcattttctaattttaattgaaaaatctatccaattaggaaata-taaaataagacttgattatatatatgctttattgcactttcagtctcttgcag |
34650132 |
T |
|
| Q |
122 |
ttgtgaaattttgatttcatgtgtttcaattgtgtggatgatgtctcctagata--tcacaattgttaatatcat |
194 |
Q |
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|||||||||||||||| ||||||| ||||||||| ||| | |||| ||||||| ||||||||||||| ||||| |
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| T |
34650131 |
ttgtgaaattttgattcgatgtgttacaattgtgttgattaggtcttctagatatctcacaattgttaacatcat |
34650057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 332 - 433
Target Start/End: Complemental strand, 18270907 - 18270806
Alignment:
| Q |
332 |
attacactcaccattccaaaaacttttccagcatgcacttgaagtttaggactatcttgtactgcagctgagtccttaagaaaagagaacattccctttg |
431 |
Q |
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|
|||| |||||||||||||||||||||| |||| || |||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||| |
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| T |
18270907 |
attaaactcaccattccaaaaactttttcagcgtgggcttggagtttaggactatcttgtactccagctgaatccttaagaaaagagaacatgccctttg |
18270808 |
T |
|
| Q |
432 |
ct |
433 |
Q |
| |
|
|| |
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|
| T |
18270807 |
ct |
18270806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 332 - 433
Target Start/End: Complemental strand, 34685950 - 34685849
Alignment:
| Q |
332 |
attacactcaccattccaaaaacttttccagcatgcacttgaagtttaggactatcttgtactgcagctgagtccttaagaaaagagaacattccctttg |
431 |
Q |
| |
|
||||||||||||||||||||||||||| |||| || |||| |||| ||||||||||||||| | | |||||||||||||||||||||||| ||||||| |
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|
| T |
34685950 |
attacactcaccattccaaaaactttttcagcgtgagcttggagttggggactatcttgtactcccgttgagtccttaagaaaagagaacataccctttg |
34685851 |
T |
|
| Q |
432 |
ct |
433 |
Q |
| |
|
|| |
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|
| T |
34685850 |
ct |
34685849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 332 - 422
Target Start/End: Original strand, 27842396 - 27842486
Alignment:
| Q |
332 |
attacactcaccattccaaaaacttttccagcatgcacttgaagtttaggactatcttgtactgcagctgagtccttaagaaaagagaaca |
422 |
Q |
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|||| ||| |||| ||||||||||||| |||| || |||| |||| |||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
27842396 |
attatacttaccagtccaaaaactttttcagcgtgagcttggagttgaggactatcttgtactccagctgagtccttaagaaaagagaaca |
27842486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 341 - 433
Target Start/End: Original strand, 34430466 - 34430558
Alignment:
| Q |
341 |
accattccaaaaacttttccagcatgcacttgaagtttaggactatcttgtactgcagctgagtccttaagaaaagagaacattccctttgct |
433 |
Q |
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|||||| ||||||||||| ||||||| ||||||||| |||||||||||||||| ||| || || ||||||||||||||||| || |||||| |
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| T |
34430466 |
accatttcaaaaacttttgcagcatgagcttgaagttgaggactatcttgtactccagttgtatctttaagaaaagagaacatgccttttgct |
34430558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 433
Target Start/End: Original strand, 34422189 - 34422286
Alignment:
| Q |
336 |
cactcaccattccaaaaacttttccagcatgcacttgaagtttaggactatcttgtactgcagctgagtccttaagaaaagagaacattccctttgct |
433 |
Q |
| |
|
||||||||||| ||| || ||| ||||||| ||||||||| ||||||||||| ||| ||| | || |||||||||||||||||| ||||||||| |
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| T |
34422189 |
cactcaccatttgaaacaccttttcagcatgggcttgaagttgaggactatcttttacctcaggcgtgttcttaagaaaagagaacatgccctttgct |
34422286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 419
Target Start/End: Complemental strand, 34649352 - 34649245
Alignment:
| Q |
312 |
aaaaatttaatcgatatttaattacactcaccattccaaaaacttttccagcatgcacttgaagtttaggactatcttgtactgcagctgagtccttaag |
411 |
Q |
| |
|
||||| ||||| ||| |||||| ||| ||||||| ||||||||| | ||||||| |||| |||| ||||||||||||||| ||| ||| |||| || |
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| T |
34649352 |
aaaaagttaattgatgcttaattccacgcaccatttcaaaaacttgttcagcatgagcttggagttcgggactatcttgtactccagtcgagcccttcag |
34649253 |
T |
|
| Q |
412 |
aaaagaga |
419 |
Q |
| |
|
|||||||| |
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|
| T |
34649252 |
aaaagaga |
34649245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 329 - 433
Target Start/End: Original strand, 2068120 - 2068224
Alignment:
| Q |
329 |
ttaattacactcaccattccaaaaacttttccagcatgcacttgaagtttaggactatcttgtactgcagctgagtccttaagaaaagagaacattccct |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| |||||| ||||||||||||||||||||| |||| |
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|
| T |
2068120 |
ttaattacactcaccattccaaaaactttttcagcatgactttggagtttaggactatcttgtactccagctgtgtccttaagaaaagagaacatgccct |
2068219 |
T |
|
| Q |
429 |
ttgct |
433 |
Q |
| |
|
||||| |
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|
| T |
2068220 |
ttgct |
2068224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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