View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17144_low_6 (Length: 344)
Name: NF17144_low_6
Description: NF17144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17144_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 51 - 328
Target Start/End: Complemental strand, 40627904 - 40627624
Alignment:
| Q |
51 |
atatatattaataagattcttattcacacttgataaatcaagaatcttgctctcaagtatgtatccatcctctgtnnnnnnnnn---tgtgtccatccat |
147 |
Q |
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| T |
40627904 |
atatatatatataagattcttattcacacttgataaatcaagaattttgctctcaagtatgtatccatcctctgtaaaaaaaaaaaatgtgtccatccat |
40627805 |
T |
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| Q |
148 |
tcatgtggatatgctcccctcaaatggaaacgttttcgtccacttacacttgttagtgcagctgagtccacttatgatcgatctcatcacccgtcgttgc |
247 |
Q |
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| T |
40627804 |
tcatgtggatatgctcccctcaaacggaaatgttttcgtccacttacacttgttagtgcagctgagtccacttatgatcgatctcataacccgttgttgc |
40627705 |
T |
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| Q |
248 |
aacgaatacatgtttgtgaagattcctcacataaatcagatcatgcatctaactttttctaatgacataaatcatattagt |
328 |
Q |
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| T |
40627704 |
aacaaatacatgtttgtgaagattcctcacataaatcagatcatgcatctaactttttctaatgacataaatcatattagt |
40627624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 40628004 - 40627949
Alignment:
| Q |
3 |
tcttagcacaaaagttaaaacattagatgtatggctcatttcacacacatatatat |
58 |
Q |
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| T |
40628004 |
tcttagcacaaaagttaaaacattagatgtatggctcatttcacacacacatatat |
40627949 |
T |
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