View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17144_low_7 (Length: 341)
Name: NF17144_low_7
Description: NF17144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17144_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 334
Target Start/End: Original strand, 30942569 - 30942884
Alignment:
| Q |
19 |
acagcggccgctctataagcaaagatctagatggttttccattaacttgcaggtttgatgaaatttatttgattcaggactaacatgttgaagcaatctg |
118 |
Q |
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| T |
30942569 |
acagcggccgctctataagcagagatctagatggttttccattaacttgcaggtttgatgaaatttatttgattcaggactaacatgttgaagcaacctg |
30942668 |
T |
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| Q |
119 |
tttgaataattaatttggacttaatgtatttttaaatctcatgtagtggagaaccatatgacaatatgatagtgattaatcaaaaaactcaatttgaaga |
218 |
Q |
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| T |
30942669 |
tttgaataattaatttggacttaatgtatttttaaatctcatgtagtggagaaccatacgacaacatgatagtgattaatcaaaaaactcaatttgaaga |
30942768 |
T |
|
| Q |
219 |
tgtaaatgatcacagtttcactcacgtaagttatcttcattgatttttgatccatgcaaacttgtaaccattacttatttacttatatgtataacttata |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30942769 |
tgtaaatgatcacagtttcactcacgtaagttatcttcattgatttttgatacatgcaaacttgtaaccattacttatttacttatatgtataacttata |
30942868 |
T |
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| Q |
319 |
ttctattttcatttca |
334 |
Q |
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||||||||||| |||| |
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| T |
30942869 |
ttctattttcagttca |
30942884 |
T |
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