View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17144_low_8 (Length: 338)
Name: NF17144_low_8
Description: NF17144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17144_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 2 - 320
Target Start/End: Complemental strand, 3167543 - 3167224
Alignment:
| Q |
2 |
ttttgtaggaaactcggtgccatcaaaggccacttcaatatactttatgattatgagtttacttggattgtcttatgtagaactctatatcaaaactttc |
101 |
Q |
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| T |
3167543 |
ttttgtaggaaactcggtgccatcaaaggccacttcaatatactttatgattatgagtttgcttggattgttttatttagaactctagagcaaaaatttc |
3167444 |
T |
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| Q |
102 |
tacattggacatacaagtaaatttgtagtacattcaacattatgattctaaagcaaccttcaaactgtactttaatgttatattccattatgttatgttt |
201 |
Q |
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| T |
3167443 |
catatttgacatacaagtaaatttctagtacattcaacattatgattcttaagcaaccttcaaactctgctttaatgttatattccattatgttatcttt |
3167344 |
T |
|
| Q |
202 |
gtagtgttggaataatttacctttgcatttgttccaaattacttg-tttttccctcaagataatgttcttattgacaaaatcattatctttattattata |
300 |
Q |
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|||||||| |||||||||||||||||||||||| |||||| |||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3167343 |
gtagtgtttgaataatttacctttgcatttgttgcaaattgcttgttttttccgtcaagggaatgttcttattgacaaaatcattatctttattattata |
3167244 |
T |
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| Q |
301 |
tcaacatcacatggtcattt |
320 |
Q |
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||||| | | |||||||||| |
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| T |
3167243 |
tcaacgttatatggtcattt |
3167224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 3130649 - 3130443
Alignment:
| Q |
10 |
gaaactcggtgccatcaaaggccacttcaatatactttatgattatgagtttacttggattgtcttatgtagaactctatatcaaaactttctacattgg |
109 |
Q |
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| T |
3130649 |
gaaactaggtgccaacaaaggccacttcaatatgctttacgagtatgattttacttggattgtcttatgtagaactgtagagcatgaatgtccacatttg |
3130550 |
T |
|
| Q |
110 |
acatacaagtaaatttgtagtacattcaacattatgattctaaagcaaccttcaaactgtactttaatgttatattccattatgttatgtttgtagtgtt |
209 |
Q |
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| T |
3130549 |
gtattctagtaaatttgtagtacatgcaacaatatgatgttgaggcaacctttaaattctgcttt-atattatattccattatgatatgtttgtattgtt |
3130451 |
T |
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| Q |
210 |
ggaataat |
217 |
Q |
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|||||||| |
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| T |
3130450 |
ggaataat |
3130443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 307
Target Start/End: Complemental strand, 22395443 - 22395258
Alignment:
| Q |
120 |
aaatttgtagtacattcaacattatgattctaaagcaaccttcaaactgtactttaatgttatattccattatgttatgtttgtagtgttggaataattt |
219 |
Q |
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| T |
22395443 |
aaatttctagtacatgcaacaatatgttgatgaagcaaccttcaaaatgtgtcctaatgttatattcctttatgttttgtttgtact-atagaat-attt |
22395346 |
T |
|
| Q |
220 |
acctttgcatttgttccaaattacttgtttttccctcaagataatgttcttattgacaaaatcattatctttattattatatcaacat |
307 |
Q |
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|| | ||| ||| ||||| ||||||||| |||| ||| ||||| ||||||||| || || ||||||||||||||| ||||||| |
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| T |
22395345 |
acatgtgctgatgtctcaaatcacttgttttgccctgcagagaatgtccttattgactaactctctatctttattattatgtcaacat |
22395258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 120 - 307
Target Start/End: Complemental strand, 12416816 - 12416630
Alignment:
| Q |
120 |
aaatttgtagtacattcaacattatgattctaaagcaaccttcaaactgtactttaatgttatattccattatgttatgtttgtagtgttggaataattt |
219 |
Q |
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|||||| |||||||| ||||| || ||| ||||||||||||||||||| | |||||||| |||||| |||||||| |||||||| ||||| ||| |||| |
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| T |
12416816 |
aaatttatagtacatgcaacaatacgatgctaaagcaaccttcaaactttgttttaatgtcatattctattatgttttgtttgtattgttgcaat-attt |
12416718 |
T |
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| Q |
220 |
acctttgcatttgttccaaattacttgtttttccctcaagataatgttcttattgacaaaatcattatctttattattatatcaacat |
307 |
Q |
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|| | || | ||||| ||||| ||||| ||| || | || |||| |||||||||| || || ||||||||||||||| ||||||| |
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| T |
12416717 |
acatgtggagttgtttcaaatcacttgctttgccttatagggaatgctcttattgactaactctctatctttattattatttcaacat |
12416630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 12416917 - 12416867
Alignment:
| Q |
17 |
ggtgccatcaaaggccacttcaatatactttatgattatgagtttacttgga |
68 |
Q |
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|||| |||||||| |||| ||||||| ||||||||||||||||||||||||| |
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| T |
12416917 |
ggtgtcatcaaagaccacatcaatat-ctttatgattatgagtttacttgga |
12416867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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