View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17144_low_9 (Length: 312)

Name: NF17144_low_9

Description: NF17144

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17144_low_9

[»] chr8 (2 HSPs)

Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 128; E-Value: 4e-66

Query Start/End: Original strand, 35 - 174

Target Start/End: Complemental strand, 13289004 - 13288865

Alignment:

Q	35	acaaaatcaactattctactaaaaatggaccctagtttcaaagttcaaaagttacaataattacttcttttatcaattatgtaaacttacattagtgaat	134	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13289004	acaaaatcaactgttctactaaaaatggaccctagtttcaaagttcaaaagttacactaattacttcttttatcaattatgtaaacttacattagtgaat	13288905	T

Q	135	ataaagggtatagacatgcttgagcttgagtatgtcaatg	174	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13288904	ataaagggtatagatatgcttgagcttgagtatgtcaatg	13288865	T

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Target: chr8; HSP #2

Raw Score: 60; E-Value: 1e-25

Query Start/End: Original strand, 228 - 300

Target Start/End: Complemental strand, 13288811 - 13288735

Alignment:

Q	228	cacatgtgaaggagtatctaa----ctagtgttttggtaatgtttttgtaaaccataatgtaaaggtagtatatatt	300	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13288811	cacatgtgaaggagtatctaattaactagtgttttggtaatgtttttgtaaaccataatgtaaaggtagtatatatt	13288735	T

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