View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17145_high_11 (Length: 469)

Name: NF17145_high_11
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17145_high_11
NF17145_high_11
[»] chr2 (18 HSPs)
chr2 (1-454)||(30737050-30737503)
chr2 (1-49)||(35352382-35352430)
chr2 (1-49)||(34107343-34107391)
chr2 (3-49)||(20942087-20942133)
chr2 (1-33)||(17896887-17896919)
chr2 (1-49)||(38242680-38242728)
chr2 (3-42)||(18089800-18089839)
chr2 (1-46)||(1244638-1244683)
chr2 (5-46)||(12206571-12206612)
chr2 (1-33)||(2057548-2057580)
chr2 (1-33)||(2971135-2971167)
chr2 (1-45)||(14307676-14307720)
chr2 (1-49)||(23664038-23664086)
chr2 (1-49)||(32256205-32256253)
chr2 (1-33)||(34644479-34644511)
chr2 (1-49)||(38581584-38581632)
chr2 (1-49)||(39334859-39334907)
chr2 (1-33)||(44487761-44487793)
[»] chr6 (9 HSPs)
chr6 (1-49)||(30668162-30668210)
chr6 (4-49)||(6455525-6455570)
chr6 (6-49)||(16119352-16119396)
chr6 (1-49)||(17305586-17305633)
chr6 (1-45)||(24256985-24257029)
chr6 (1-49)||(26669637-26669685)
chr6 (1-33)||(29204863-29204895)
chr6 (1-33)||(32540945-32540977)
chr6 (1-49)||(34675784-34675832)
[»] chr7 (10 HSPs)
chr7 (1-49)||(32309126-32309174)
chr7 (1-47)||(10958102-10958148)
chr7 (1-45)||(26734253-26734297)
chr7 (1-33)||(41000829-41000861)
chr7 (1-39)||(19924836-19924874)
chr7 (1-49)||(5787530-5787576)
chr7 (1-30)||(11651117-11651146)
chr7 (1-45)||(1649221-1649265)
chr7 (1-49)||(44409269-44409317)
chr7 (3-43)||(47514274-47514314)
[»] chr5 (12 HSPs)
chr5 (1-49)||(37986845-37986893)
chr5 (1-46)||(3535917-3535962)
chr5 (1-49)||(36116858-36116905)
chr5 (1-40)||(20220160-20220199)
chr5 (1-40)||(40384320-40384359)
chr5 (2-40)||(31004117-31004155)
chr5 (4-49)||(34325337-34325382)
chr5 (1-46)||(38040334-38040379)
chr5 (2-46)||(17137848-17137892)
chr5 (1-49)||(28537204-28537252)
chr5 (1-45)||(31556887-31556931)
chr5 (1-33)||(39684307-39684339)
[»] chr3 (9 HSPs)
chr3 (1-49)||(40160804-40160852)
chr3 (4-46)||(21142714-21142756)
chr3 (1-37)||(38507715-38507751)
chr3 (2-49)||(43911676-43911723)
chr3 (1-46)||(50724436-50724479)
chr3 (1-46)||(50788369-50788412)
chr3 (1-46)||(21248971-21249016)
chr3 (1-33)||(28951935-28951967)
chr3 (1-33)||(33533272-33533304)
[»] chr4 (10 HSPs)
chr4 (1-48)||(33359886-33359933)
chr4 (1-48)||(49039424-49039471)
chr4 (1-46)||(20610808-20610853)
chr4 (1-40)||(6481571-6481610)
chr4 (3-49)||(23226683-23226729)
chr4 (3-33)||(39449470-39449500)
chr4 (3-49)||(54854157-54854203)
chr4 (4-49)||(6202675-6202720)
chr4 (1-45)||(30616069-30616111)
chr4 (1-49)||(41492477-41492525)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-46)||(440468-440513)
[»] chr1 (21 HSPs)
chr1 (1-46)||(41677129-41677174)
chr1 (1-41)||(3046155-3046195)
chr1 (5-49)||(7906304-7906348)
chr1 (1-49)||(19866544-19866592)
chr1 (1-49)||(23973460-23973508)
chr1 (1-49)||(38028606-38028654)
chr1 (1-49)||(43020680-43020728)
chr1 (1-49)||(48260167-48260215)
chr1 (1-44)||(3341719-3341762)
chr1 (1-40)||(26349966-26350005)
chr1 (3-49)||(1721211-1721257)
chr1 (1-46)||(2643796-2643841)
chr1 (1-46)||(9768790-9768835)
chr1 (1-46)||(9976365-9976410)
chr1 (1-46)||(12553263-12553308)
chr1 (1-46)||(49632356-49632401)
chr1 (1-46)||(50199457-50199502)
chr1 (1-49)||(50755413-50755459)
chr1 (1-49)||(195113-195161)
chr1 (1-49)||(2903005-2903053)
chr1 (1-33)||(4511519-4511551)
[»] scaffold0118 (1 HSPs)
scaffold0118 (1-45)||(37310-37354)
[»] chr8 (15 HSPs)
chr8 (1-45)||(14011020-14011064)
chr8 (1-48)||(7345497-7345544)
chr8 (2-41)||(22438570-22438609)
chr8 (3-42)||(28979097-28979136)
chr8 (3-49)||(39208847-39208893)
chr8 (3-40)||(27821892-27821929)
chr8 (4-33)||(36593266-36593295)
chr8 (1-49)||(220340-220388)
chr8 (1-49)||(689495-689543)
chr8 (1-49)||(733963-734011)
chr8 (1-49)||(857859-857907)
chr8 (1-41)||(3212916-3212956)
chr8 (1-49)||(6372582-6372630)
chr8 (3-39)||(22847250-22847286)
chr8 (4-48)||(44254291-44254335)
[»] scaffold0119 (1 HSPs)
scaffold0119 (1-49)||(1108-1156)


Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 30737050 - 30737503
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttgnnnnnnnnnnnnnnntagaaagtgagtttgtaaacttctgaaaataatgtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||    
T  30737050 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttgaaaaaaaaatgaaa-tagaaagtgagtttgtaaacttctgaaaataatgtt 30737148  T
Q  101 gaccattggagtactctccaccttaatttgtttt-ttgcactatttctctattgcgaccttgaaaactataaaggagtctaaagtttcatacattgaatg 199  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30737149 gaccattggagtactctccaccttaatttgtttttttgcactatttctctattgcgaccttgaaaactataaaggagtctaaagtttcatacattgaatg 30737248  T
Q  200 aactaagtagagatgcgtatatcgtgaataattttctataaaagtgataaagtatttcagactacttccatacatgcatgcatgtctgaaacaaatattt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30737249 aactaagtagagatgcgtatatcgtgaataattttctataaaagtgataaagtatttcagactacttccatacatgcatgcatgtctgaaacaaatattt 30737348  T
Q  300 gtatgtatgatatgtaataggtttgaattcctttgtgcacccttttcgaacttgctagattttttacccttgatgtaattcacaaatgcctcaaaatcag 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30737349 gtatgtatgatatgtaataggtttgaattcctttgtgcacccttttcgaacttgctagattttttacccttgatgtaattcacaaatgcctcaaaatcag 30737448  T
Q  400 caaaatctaggttaccaaacaataaccatattatggatgaattgttgaggagttt 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30737449 caaaatctaggttaccaaacaataaccatattatggatgaattgttgaggagttt 30737503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 35352430 - 35352382
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  35352430 cccacttattcaccttgaaaaatgtgaattctagtcactagactacttg 35352382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34107343 - 34107391
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||||||||||||| ||||||||||||||||| |||||| |||||||    
T  34107343 cccacttattcaccttgaaaaatgtgaattctagccactagactacttg 34107391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 20942133 - 20942087
Alignment:
Q  3 cacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||||||||||| ||||| |||||||||||||||||| |||||||    
T  20942133 cacttattcaccttgaaaaaagtgaattctagtcactagactacttg 20942087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 17896887 - 17896919
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattcta 33  Q
    |||||||||||||||||||||||||||||||||    
T  17896887 cccacttattcaccttaaaaaatgtgaattcta 17896919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 38242680 - 38242728
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||| |||||||| |||||||||||||||||||||||| || |||||||    
T  38242680 cccatttattcactttaaaaaatgtgaattctagtcaccagactacttg 38242728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 18089800 - 18089839
Alignment:
Q  3 cacttattcaccttaaaaaatgtgaattctagtcactagg 42  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  18089800 cacttattcaccttgaaaaacgtgaattctagtcactagg 18089839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 1244638 - 1244683
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctac 46  Q
    |||||||||||||||| ||||| ||||||||||| |||||| ||||    
T  1244638 cccacttattcaccttgaaaaaggtgaattctagccactagactac 1244683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 12206571 - 12206612
Alignment:
Q  5 cttattcaccttaaaaaatgtgaattctagtcactaggctac 46  Q
    |||||||||||| ||||| ||||||||||| |||||||||||    
T  12206571 cttattcaccttgaaaaaggtgaattctagccactaggctac 12206612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2057548 - 2057580
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattcta 33  Q
    |||||||||||||||||||||| ||||||||||    
T  2057548 cccacttattcaccttaaaaaaggtgaattcta 2057580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 2971167 - 2971135
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattcta 33  Q
    |||||||||||||||||||||| ||||||||||    
T  2971167 cccacttattcaccttaaaaaaggtgaattcta 2971135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 14307720 - 14307676
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggcta 45  Q
    ||||||||||||| |||||||| ||||||||||| ||||| ||||    
T  14307720 cccacttattcactttaaaaaaagtgaattctagccactaagcta 14307676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 23664038 - 23664086
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||| ||||||||||| ||||| |||||||||| ||||||| |||||||    
T  23664038 cccatttattcaccttgaaaaaagtgaattctaatcactagactacttg 23664086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32256205 - 32256253
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    ||||||||||||| || |||||  |||||| ||||||||||||||||||    
T  32256205 cccacttattcacattgaaaaagttgaattatagtcactaggctacttg 32256253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 34644511 - 34644479
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattcta 33  Q
    ||||||||||||||||||||| |||||||||||    
T  34644511 cccacttattcaccttaaaaattgtgaattcta 34644479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 38581632 - 38581584
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||||||||| ||||||||| ||| ||||||  ||||||||||||||    
T  38581632 cccacttattcatcttaaaaaaggtgtattctaaccactaggctacttg 38581584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 39334907 - 39334859
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    ||||||||||||| || ||||| ||||||||||| |||||| |||||||    
T  39334907 cccacttattcactttgaaaaaggtgaattctagccactagactacttg 39334859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 44487793 - 44487761
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattcta 33  Q
    |||||||||||||||||||||| ||||||||||    
T  44487793 cccacttattcaccttaaaaaaggtgaattcta 44487761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30668210 - 30668162
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||    
T  30668210 cccacttattcaccttaaaaaatgtgaattatagtcactagactacttg 30668162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 6455525 - 6455570
Alignment:
Q  4 acttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    ||||||||||||| |||||  |||||||||| ||||||||||||||    
T  6455525 acttattcaccttgaaaaagatgaattctagacactaggctacttg 6455570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 16119352 - 16119396
Alignment:
Q  6 ttattcaccttaaaa-aatgtgaattctagtcactaggctacttg 49  Q
    ||||||||||||||| |||||||||||||| |||||| |||||||    
T  16119352 ttattcaccttaaaaaaatgtgaattctagccactagactacttg 16119396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 17305586 - 17305633
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||||||||||||| ||||| |||||||||| |||||| ||||||||    
T  17305586 cccacttattcaccttgaaaaa-gtgaattctaatcactaagctacttg 17305633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24256985 - 24257029
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggcta 45  Q
    |||||||||||||||| ||||| || |||||||| ||||||||||    
T  24256985 cccacttattcaccttgaaaaaagtaaattctagccactaggcta 24257029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 26669685 - 26669637
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||||||||||||| ||||| ||||||||||| |||||  |||||||    
T  26669685 cccacttattcaccttgaaaaaggtgaattctagccactaaactacttg 26669637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 29204895 - 29204863
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattcta 33  Q
    |||||||||||||||||||||| ||||||||||    
T  29204895 cccacttattcaccttaaaaaaagtgaattcta 29204863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 32540977 - 32540945
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattcta 33  Q
    |||||||||||||||||||||| ||||||||||    
T  32540977 cccacttattcaccttaaaaaaagtgaattcta 32540945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34675832 - 34675784
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||| |||||||| |||||||||||||||||||| |||||  |||||||    
T  34675832 cccagttattcactttaaaaaatgtgaattctagccactacactacttg 34675784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 32309174 - 32309126
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||| ||||||||||||||||||||||||||||| |||||| |||||||    
T  32309174 cccagttattcaccttaaaaaatgtgaattctagccactagactacttg 32309126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 10958102 - 10958148
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctact 47  Q
    ||||||||||||||| |||||| ||||||||||| ||||||||||||    
T  10958102 cccacttattcacctcaaaaaaggtgaattctagccactaggctact 10958148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 26734297 - 26734253
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggcta 45  Q
    |||||||||||||||| ||||| ||||||||||| ||||||||||    
T  26734297 cccacttattcaccttgaaaaaggtgaattctagccactaggcta 26734253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 41000829 - 41000861
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattcta 33  Q
    |||||||||||||||||||||||||||||||||    
T  41000829 cccacttattcaccttaaaaaatgtgaattcta 41000861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 19924836 - 19924874
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcact 39  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  19924836 cccacttattcaccttaaaaaaagtgaattctagccact 19924874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5787530 - 5787576
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    ||||||||||||||||| ||   ||||||||||||||||||||||||||    
T  5787530 cccacttattcaccttataag--gtgaattctagtcactaggctacttg 5787576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 11651117 - 11651146
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaatt 30  Q
    ||||||||||||||||||||||||||||||    
T  11651117 cccacttattcaccttaaaaaatgtgaatt 11651146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 1649221 - 1649265
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggcta 45  Q
    |||||||||||||||| ||||  ||||||||||| ||||||||||    
T  1649221 cccacttattcaccttgaaaatggtgaattctagccactaggcta 1649265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 44409269 - 44409317
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||||||||||||| ||||| ||||||||||  ||||||| ||||||    
T  44409269 cccacttattcaccttgaaaaaggtgaattctaaccactaggttacttg 44409317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 47514274 - 47514314
Alignment:
Q  3 cacttattcaccttaaaaaatgtgaattctagtcactaggc 43  Q
    |||||||||||||| |||||| ||||||||||||| |||||    
T  47514274 cacttattcaccttgaaaaatctgaattctagtcagtaggc 47514314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37986893 - 37986845
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||||||||||||| ||||| ||||||||||| ||||||||||||||    
T  37986893 cccacttattcaccttgaaaaaggtgaattctagccactaggctacttg 37986845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3535962 - 3535917
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctac 46  Q
    |||||||||||||||||||||| ||||||||||  |||||||||||    
T  3535962 cccacttattcaccttaaaaaaagtgaattctaaccactaggctac 3535917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36116905 - 36116858
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||||||||| ||| ||||||||||||||||| ||||||||||||||    
T  36116905 cccacttattcatcttcaaaaatgtgaattctag-cactaggctacttg 36116858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 20220160 - 20220199
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcacta 40  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  20220160 cccacttatttaccttaaaaaatgtgaattctaatcacta 20220199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 40384320 - 40384359
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcacta 40  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  40384320 cccacttattcaccttaaaaaaggtgaattctagccacta 40384359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 31004155 - 31004117
Alignment:
Q  2 ccacttattcaccttaaaaaatgtgaattctagtcacta 40  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  31004155 ccacttattcaccttaaaaaaggtaaattctagtcacta 31004117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 34325337 - 34325382
Alignment:
Q  4 acttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||||||||||||||||  |||||||||| ||||| ||||||||    
T  34325337 acttattcaccttaaaaaaaatgaattctagccactaagctacttg 34325382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 38040334 - 38040379
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctac 46  Q
    |||||||||||| ||| ||||| ||||||| |||||||||||||||    
T  38040334 cccacttattcatcttgaaaaaggtgaattatagtcactaggctac 38040379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 17137892 - 17137848
Alignment:
Q  2 ccacttattcaccttaaaaaatgtgaattctagtcactaggctac 46  Q
    ||||||||||||||| ||||| ||||||||||  |||||||||||    
T  17137892 ccacttattcaccttgaaaaacgtgaattctaaccactaggctac 17137848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28537204 - 28537252
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    ||||||||||||| || ||||  ||||||||||| ||||||||||||||    
T  28537204 cccacttattcactttgaaaatggtgaattctagccactaggctacttg 28537252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31556887 - 31556931
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggcta 45  Q
    |||||||||||||||| ||||  ||||||||||| ||||||||||    
T  31556887 cccacttattcaccttgaaaagggtgaattctagccactaggcta 31556931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 39684307 - 39684339
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattcta 33  Q
    |||||||||||||||||||||| ||||||||||    
T  39684307 cccacttattcaccttaaaaaaggtgaattcta 39684339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 40160804 - 40160852
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||||||||||||| ||||| ||||||||||| ||||||||||||||    
T  40160804 cccacttattcacctttaaaaaggtgaattctagccactaggctacttg 40160852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 21142756 - 21142714
Alignment:
Q  4 acttattcaccttaaaaaatgtgaattctagtcactaggctac 46  Q
    |||||||||| |||||||| |||||||||||||||||||||||    
T  21142756 acttattcactttaaaaaaggtgaattctagtcactaggctac 21142714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38507715 - 38507751
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtca 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  38507715 cccacttattcaccttaaaaaatctgaattctagtca 38507751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 43911676 - 43911723
Alignment:
Q  2 ccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    ||||||||||||||| ||||||||||||| | | ||||||||||||||    
T  43911676 ccacttattcaccttgaaaaatgtgaattattgccactaggctacttg 43911723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 50724436 - 50724479
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctac 46  Q
    |||||||||||||||||||||  ||||||||||| |||||||||||    
T  50724436 cccacttattcaccttaaaaa--gtgaattctagccactaggctac 50724479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 50788412 - 50788369
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctac 46  Q
    |||||||||||||||||||||  ||||||||||| |||||||||||    
T  50788412 cccacttattcaccttaaaaa--gtgaattctagccactaggctac 50788369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 21249016 - 21248971
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctac 46  Q
    |||||||||||||||| ||||| ||||||||||| |||||| ||||    
T  21249016 cccacttattcaccttgaaaaaggtgaattctagccactagactac 21248971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 28951935 - 28951967
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattcta 33  Q
    |||||||||||||||| ||||||||||||||||    
T  28951935 cccacttattcaccttgaaaaatgtgaattcta 28951967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 33533272 - 33533304
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattcta 33  Q
    |||||||||||||||||||||| ||||||||||    
T  33533272 cccacttattcaccttaaaaaaagtgaattcta 33533304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 33359886 - 33359933
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctactt 48  Q
    |||||||||||||||| ||||| ||||||||||| |||||||||||||    
T  33359886 cccacttattcaccttgaaaaaggtgaattctagccactaggctactt 33359933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 49039471 - 49039424
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctactt 48  Q
    |||||||||||||||| ||||| ||||||||||| |||||||||||||    
T  49039471 cccacttattcaccttgaaaaaggtgaattctagccactaggctactt 49039424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 20610808 - 20610853
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctac 46  Q
    |||||||||||||||||||||| ||||||||||| |||||| ||||    
T  20610808 cccacttattcaccttaaaaaaggtgaattctagccactagactac 20610853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 6481610 - 6481571
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcacta 40  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  6481610 cccacttattcaccttaaaaatggtgaattctagtcacta 6481571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 23226729 - 23226683
Alignment:
Q  3 cacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||||||||||||||||||||||||| ||| |||||  |||||||    
T  23226729 cacttattcaccttaaaaaatgtgaattatagccactatactacttg 23226683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 33
Target Start/End: Original strand, 39449470 - 39449500
Alignment:
Q  3 cacttattcaccttaaaaaatgtgaattcta 33  Q
    |||||||||||||||||||||||||||||||    
T  39449470 cacttattcaccttaaaaaatgtgaattcta 39449500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 54854203 - 54854157
Alignment:
Q  3 cacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||||||||||| ||||| ||||||||||| |||||| |||||||    
T  54854203 cacttattcaccttgaaaaaagtgaattctagccactagactacttg 54854157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 6202675 - 6202720
Alignment:
Q  4 acttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    ||||||||| ||| ||||| ||||||||||||||||| ||||||||    
T  6202675 acttattcatcttgaaaaaggtgaattctagtcactaagctacttg 6202720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30616069 - 30616111
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggcta 45  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||    
T  30616069 cccacttattcactttaaaaa--gtgaattctagtcactaggcta 30616111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41492525 - 41492477
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||||||| ||||| ||||| ||||||||||| ||||||| ||||||    
T  41492525 cccacttatttaccttgaaaaaggtgaattctagccactaggttacttg 41492477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 440468 - 440513
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctac 46  Q
    |||||||||||||||||||||| ||||||||||  |||||||||||    
T  440468 cccacttattcaccttaaaaaaggtgaattctaaccactaggctac 440513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 41677129 - 41677174
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctac 46  Q
    |||||||||||||||| ||||| ||||||||||| |||||||||||    
T  41677129 cccacttattcaccttgaaaaaggtgaattctagccactaggctac 41677174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 3046195 - 3046155
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactag 41  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  3046195 cccacttattcaccttaaaaaaggtaaattctagtcactag 3046155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 7906348 - 7906304
Alignment:
Q  5 cttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||| ||||||||||||||||||||||| ||||||| ||||||    
T  7906348 cttattgaccttaaaaaatgtgaattctagccactagggtacttg 7906304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 19866544 - 19866592
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||||||||||||||||||| ||||||||||| |||||  |||||||    
T  19866544 cccacttattcaccttaaaaaaggtgaattctagccactaaactacttg 19866592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 23973508 - 23973460
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    ||||||||||||| || ||||||||||||||||| |||||| |||||||    
T  23973508 cccacttattcacgttgaaaaatgtgaattctagccactagactacttg 23973460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 38028606 - 38028654
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||||||||||||| ||||||||||||||||   |||||||||||||    
T  38028606 cccacttattcaccttgaaaaatgtgaattctaactactaggctacttg 38028654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 43020680 - 43020728
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||| ||||||||| ||||||||||||||||| ||||| ||||||||    
T  43020680 cccactcattcaccttgaaaaatgtgaattctagccactacgctacttg 43020728  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 48260215 - 48260167
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||||||||||||| ||||||||||||||||| || |||||| ||||    
T  48260215 cccacttattcaccttgaaaaatgtgaattctagccattaggctccttg 48260167  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 3341762 - 3341719
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggct 44  Q
    |||||||||||||||| ||||| ||||||||||| |||||||||    
T  3341762 cccacttattcaccttgaaaaaggtgaattctagccactaggct 3341719  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 26350005 - 26349966
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcacta 40  Q
    ||||||||||||||||||||||| |||||| |||||||||    
T  26350005 cccacttattcaccttaaaaaatatgaattttagtcacta 26349966  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 1721211 - 1721257
Alignment:
Q  3 cacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||||||||||||||||| ||||||||||| |  |||||||||||    
T  1721211 cacttattcaccttaaaaaaggtgaattctagccgttaggctacttg 1721257  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2643841 - 2643796
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctac 46  Q
    |||||||||||||||||||||||||||| ||||  |||||| ||||    
T  2643841 cccacttattcaccttaaaaaatgtgaactctaaccactagactac 2643796  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 9768835 - 9768790
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctac 46  Q
    |||||||||||||||| ||||| |||||||||||  ||||||||||    
T  9768835 cccacttattcaccttgaaaaaggtgaattctagctactaggctac 9768790  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 9976410 - 9976365
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctac 46  Q
    |||||||||||||||| ||||| ||||||||||| ||||| |||||    
T  9976410 cccacttattcaccttgaaaaaagtgaattctagccactacgctac 9976365  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 12553263 - 12553308
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctac 46  Q
    ||||||||||||| || ||||| ||||||||||| |||||||||||    
T  12553263 cccacttattcactttgaaaaaggtgaattctagccactaggctac 12553308  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 49632356 - 49632401
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctac 46  Q
    |||||||||||||||| ||||| ||||||||||| ||||| |||||    
T  49632356 cccacttattcacctttaaaaaggtgaattctaggcactaagctac 49632401  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 50199502 - 50199457
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctac 46  Q
    |||||||||||||||| ||||| || |||||||| |||||||||||    
T  50199502 cccacttattcaccttgaaaaaggtcaattctagccactaggctac 50199457  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 50755413 - 50755459
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    ||||||||||||||||| |||  ||||||||||| ||||||||||||||    
T  50755413 cccacttattcaccttataaa--gtgaattctagccactaggctacttg 50755459  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 195113 - 195161
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||||||||||||| ||||| ||||||||||  ||||| ||||||||    
T  195113 cccacttattcaccttgaaaaaggtgaattctaaccactaagctacttg 195161  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2903053 - 2903005
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||||||||||||| ||||| | ||||||||| ||||||| ||||||    
T  2903053 cccacttattcaccttgaaaaaggagaattctagccactaggttacttg 2903005  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4511551 - 4511519
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattcta 33  Q
    |||||||||||||||||||||| ||||||||||    
T  4511551 cccacttattcaccttaaaaaaggtgaattcta 4511519  T

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Target: scaffold0118 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 37354 - 37310
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggcta 45  Q
    |||||||||||||||||||||||||||| | ||| ||||||||||    
T  37354 cccacttattcaccttaaaaaatgtgaaatttagccactaggcta 37310  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 14011064 - 14011020
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggcta 45  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||    
T  14011064 cccacttattcatcttaaaaaatgtgaattctaaccactaggcta 14011020  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 7345497 - 7345544
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctactt 48  Q
    |||||||||||||||||||||| |||||||||| ||| |||| |||||    
T  7345497 cccacttattcaccttaaaaaaggtgaattctaatcattaggttactt 7345544  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 22438609 - 22438570
Alignment:
Q  2 ccacttattcaccttaaaaaatgtgaattctagtcactag 41  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  22438609 ccacttattcaccttaaaaaaggtgaattctaatcactag 22438570  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 28979097 - 28979136
Alignment:
Q  3 cacttattcaccttaaaaaatgtgaattctagtcactagg 42  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  28979097 cacttattcaccttaaaaaatgtgaattatagttactagg 28979136  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 39208893 - 39208847
Alignment:
Q  3 cacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||||||||||| ||||| ||||||||||| |||||| |||||||    
T  39208893 cacttattcacctttaaaaaggtgaattctagccactagactacttg 39208847  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 27821929 - 27821892
Alignment:
Q  3 cacttattcaccttaaaaaatgtgaattctagtcacta 40  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  27821929 cacttattcaccttaaaaaaggtgaattctagccacta 27821892  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 33
Target Start/End: Original strand, 36593266 - 36593295
Alignment:
Q  4 acttattcaccttaaaaaatgtgaattcta 33  Q
    ||||||||||||||||||||||||||||||    
T  36593266 acttattcaccttaaaaaatgtgaattcta 36593295  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 220388 - 220340
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||||||||||||| ||||| ||||||||||  |||||| |||||||    
T  220388 cccacttattcaccttgaaaaaggtgaattctaaccactagactacttg 220340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 689543 - 689495
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||||||||||||| ||||| ||||||||||  |||||| |||||||    
T  689543 cccacttattcaccttgaaaaaggtgaattctaaccactagactacttg 689495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 734011 - 733963
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||||||||||||| ||||| ||||||||||  |||||| |||||||    
T  734011 cccacttattcaccttgaaaaaggtgaattctaaccactagactacttg 733963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 857907 - 857859
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||||||||||||| ||||| ||||||||||  |||||| |||||||    
T  857907 cccacttattcaccttgaaaaaggtgaattctaaccactagactacttg 857859  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3212916 - 3212956
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactag 41  Q
    ||||||||||||| || ||||||||||||| ||||||||||    
T  3212916 cccacttattcacttttaaaaatgtgaattatagtcactag 3212956  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6372630 - 6372582
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    ||||||||||||  || ||||||||||||||| | ||||||||||||||    
T  6372630 cccacttattcatattgaaaaatgtgaattcttgccactaggctacttg 6372582  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 22847286 - 22847250
Alignment:
Q  3 cacttattcaccttaaaaaatgtgaattctagtcact 39  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  22847286 cacttattcaccttaaaaaaggtgaattctagccact 22847250  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 44254335 - 44254291
Alignment:
Q  4 acttattcaccttaaaaaatgtgaattctagtcactaggctactt 48  Q
    ||||||||||||| ||||||||||||| ||| ||||| |||||||    
T  44254335 acttattcaccttgaaaaatgtgaattttagccactatgctactt 44254291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 1108 - 1156
Alignment:
Q  1 cccacttattcaccttaaaaaatgtgaattctagtcactaggctacttg 49  Q
    |||||||||||||||| ||||| ||||||||||| |||||  |||||||    
T  1108 cccacttattcaccttgaaaaaggtgaattctagccactaaactacttg 1156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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