View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17145_high_13 (Length: 433)
Name: NF17145_high_13
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17145_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 54712902 - 54712646
Alignment:
| Q |
20 |
aatccctcataaagcctcaaatattctttatttttgaatgaactatgcgtggttaaatgattgtagatttgaannnnnnnatgaaaactacatattccaa |
119 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||||||| || |||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
54712902 |
aatccctcataaagcctcaaatattctttatttttcaatcaactatgtgtagttaaatgattgtagatttgaatttttttatgaaaactacagattccaa |
54712803 |
T |
|
| Q |
120 |
tttttcttataaaaattacatactagagatttgcaatatttcattgattttttctggaggagaataaatgacgaagaagattgtttcaccatttttgtat |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
54712802 |
tttttcttataaaaattacatactagagatttgcaatatttcattgatttttt-tggaggagaataaatgacgaagaagattgtttcatcacttttgtat |
54712704 |
T |
|
| Q |
220 |
gatttattatagttatcaaacccattacccagaggtgtgatatgaaggaaagaggatg |
277 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
54712703 |
aatttactatagttatcaaacccattacccagaggtgtgacatgaaagaaagaggatg |
54712646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 340 - 421
Target Start/End: Complemental strand, 54712572 - 54712489
Alignment:
| Q |
340 |
gtgtgaaaatactataaagtccatgccacata--ggagtggtacaattaaaagggtgtccatgtctaattacccatcccatatt |
421 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
54712572 |
gtgtaaaaatactataaagtccatgccacatataggagtggtacaagaaaaagggtgtccatgtctaattacccatcccatatt |
54712489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 153 - 277
Target Start/End: Complemental strand, 41664512 - 41664389
Alignment:
| Q |
153 |
caatatttcattgattttttctggaggagaataaatgacgaagaagattgtttcaccatttttgtatgatttattatagttatcaaacccattacccaga |
252 |
Q |
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| T |
41664512 |
caatatttcattgatttatt-tggaggagaataaatgacgaagaagattgtttcaccacttttgtatgatttactatagttatcaaacccattacccaga |
41664414 |
T |
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| Q |
253 |
ggtgtgatatgaaggaaagaggatg |
277 |
Q |
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| T |
41664413 |
ggtgtgatatgaaggaaagaggatg |
41664389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 41664688 - 41664565
Alignment:
| Q |
20 |
aatccctcataaagcctcaaatattctttatttttgaatgaa-ctatgcgtggttaaatgattgtagatttgaannnnnnnatgaaaactacatattcca |
118 |
Q |
| |
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|||||||| ||||||||||||| |||||||||||| ||| || ||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
41664688 |
aatccctcttaaagcctcaaattttctttatttttcaatcaaactatgcgtggttaaatgattgtagatttgaatttttttatgaaaactgcatattcca |
41664589 |
T |
|
| Q |
119 |
atttttcttataaaaattacatac |
142 |
Q |
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|||||||||||||||||||||||| |
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| T |
41664588 |
atttttcttataaaaattacatac |
41664565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 340 - 412
Target Start/End: Complemental strand, 41664238 - 41664166
Alignment:
| Q |
340 |
gtgtgaaaatactataaagtccatgccacataggagtggtacaattaaaagggtgtccatgtctaattaccca |
412 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
41664238 |
gtgtgaaaatactataaagcccatgccacataggagtggtacaaaagaaatggtgtccatgtctaattaccca |
41664166 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 151 - 277
Target Start/End: Original strand, 32972446 - 32972571
Alignment:
| Q |
151 |
tgcaatatttcattgattttttctggaggagaataaatgacgaagaagattgtttcaccatttttgtatgatttattatagttatcaaacccattaccca |
250 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| || |
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| T |
32972446 |
tgcaatatttcattgatttctt-tggaggagaataaatgacgaagaagattgtttcaccacttttgtatgatttactatagttatcaaacccattacaca |
32972544 |
T |
|
| Q |
251 |
gaggtgtgatatgaaggaaagaggatg |
277 |
Q |
| |
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| T |
32972545 |
gaggtgtgatatgaaggaaagaggatg |
32972571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 32972271 - 32972396
Alignment:
| Q |
20 |
aatccctcataaa-gcctcaaatattctttatttttgaatgaa-ctatgcgtggttaaatgattgtagatttgaannnnnnnatgaaaactacatattcc |
117 |
Q |
| |
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||||||||||||| ||||||||| || ||||||||| ||| || ||||||||||||||||||||||||||||||| ||||||||| || ||| | |
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| T |
32972271 |
aatccctcataaaagcctcaaattttatttatttttcaatcaaactatgcgtggttaaatgattgtagatttgaatttttttatgaaaactgcagatttc |
32972370 |
T |
|
| Q |
118 |
aatttttcttataaaaattacatact |
143 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
32972371 |
aatttttcttataaaaattacatact |
32972396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 32976738 - 32976781
Alignment:
| Q |
340 |
gtgtgaaaatactataaagtccatgccacataggagtggtacaa |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32976738 |
gtgtgaaaatactataaagtccatgccacataggagtggtacaa |
32976781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 31887985 - 31887946
Alignment:
| Q |
360 |
ccatgccacataggagtggtacaattaaaagggtgtccatg |
400 |
Q |
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| T |
31887985 |
ccatgccacatagg-gtggtacaaataaaagggtgtccatg |
31887946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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