View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17145_high_20 (Length: 362)
Name: NF17145_high_20
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17145_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 2943540 - 2943884
Alignment:
| Q |
1 |
ttttattgaacactgttcaggagcaatttttgatcatgaagccaaatgaggttacaacccgatcattcaaaatttacccaagcaccgaccaagcttccaa |
100 |
Q |
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| T |
2943540 |
ttttattgaacactgttcaggagcaatttttgatcatgaagccaaatgagattacaacccgatcattcaaaatttacccaagcaccgaccaagcttccaa |
2943639 |
T |
|
| Q |
101 |
atattcctgtgcaggtaaagttgaagcttaatatattcttatttctgacgtgtatacagaaaatgttgatgtttatattatgagtannnnnnnnggtgtt |
200 |
Q |
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| T |
2943640 |
atattcctgtgcaggtaaagttgaagcttaatatattgttatttctgacatgtatacagaaaatgttgatgtttatattatgagtattttttttggtgtt |
2943739 |
T |
|
| Q |
201 |
gttaatgaagccatattgaaggattctgattatggtgaagttgatagagctgagtgtcaatttactaccactggaactgttcttgacaatggaacacagg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2943740 |
gttaatgaagccatattgaaggattctgattatggtgaagttgatagagctgagtgtcagtttactaccactggaactgttcttgacaatggaacacagg |
2943839 |
T |
|
| Q |
301 |
tttgtttcttcctgcatatagaaatttttaagtctttattctctt |
345 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
2943840 |
tttgtttcttcctgcgtatagaaaattttaagtctttattctctt |
2943884 |
T |
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