View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17145_high_23 (Length: 346)
Name: NF17145_high_23
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17145_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 106 - 335
Target Start/End: Original strand, 32032384 - 32032613
Alignment:
| Q |
106 |
cttgcttaaagattgggtgggtgcagatttgtcatataatttggtgatcggtttcataaactcgaaagggtctgcttcatttggttctgataaccctcag |
205 |
Q |
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| T |
32032384 |
cttgcttaaagattgggtgggtgcagatttgtcatataattcggtgatcggtttcataaactcgaaagggtctgcttcatttggttctgataaccctcag |
32032483 |
T |
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| Q |
206 |
gggtctatgttactaacatatttgactcatcccgtgatgagggttattacgcgtctaattgaaactgcaggtctcaaggcgtcagaactacttctacttt |
305 |
Q |
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| T |
32032484 |
gggtctatgttactaacatatttgactcatcccgcgatgagggttattacgcgtctaattgaaactgcaggtctcaaggcgtcagaactacctccacttt |
32032583 |
T |
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| Q |
306 |
ggtaccgactttttatctgtctcagttcat |
335 |
Q |
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| T |
32032584 |
ggtaccgactttttatctgtctcagttcat |
32032613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 32032279 - 32032356
Alignment:
| Q |
1 |
tccacttggagaaggagatgtaatatttctattataaattatgaagtgtgcaatgaaagtgttgttctcatgctatga |
78 |
Q |
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| T |
32032279 |
tccacttggagaaggagatgtaatatttctattataaattatgaagtgtgcaatgaaagtgttgttctcatgctatga |
32032356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 32078774 - 32078824
Alignment:
| Q |
4 |
acttggagaaggagatgtaatatttctattataaattatgaagtgtgcaat |
54 |
Q |
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| T |
32078774 |
acttggagaaggacatgtaatatttgtacaataaattaagaagtgtgcaat |
32078824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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