View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17145_high_28 (Length: 301)
Name: NF17145_high_28
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17145_high_28 |
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| [»] scaffold0300 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 288
Target Start/End: Original strand, 42451290 - 42451561
Alignment:
| Q |
17 |
acaatgctgatttttattaatatgtgtgaaaattgcaaaagtagctcattataagggacatatnnnnnnntaaataagggacatagatagtagcaggtct |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| || |
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| T |
42451290 |
acaatgctgatttttattaatatgtgtgaaaattgcaaaagtagctcattataagggacatataaaaaaataaataagggacatagatagttgcaggcct |
42451389 |
T |
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| Q |
117 |
aagcagcacctaaaaagccggttgaaaggtggatggaatcttttccagtctagagactggcggattaccctcgaaagaaaggataaaaatccggttagga |
216 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42451390 |
aagcagcacctaaaaagccggttgaaaagtggatggaatcttttccagtctagagactggcggattaccctcgaaagaaaggatacaaatccggttagga |
42451489 |
T |
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| Q |
217 |
aagacttgtaagaaatgtatgtgcttggttgttttgtctaccaaccctgaaagaattgtgactctttcttct |
288 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42451490 |
aagacttgtaagaaatatatgtgcttggttgttttgtctaccaaccctgaaagaattgtgactcttttttct |
42451561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 152 - 288
Target Start/End: Original strand, 11677850 - 11677986
Alignment:
| Q |
152 |
gaatcttttccagtctagagactggcggattaccctcgaaagaaaggataaaaatccggttaggaaagacttgtaagaaatgtatgtgcttggttgtttt |
251 |
Q |
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| T |
11677850 |
gaatcttttccagtctagagactggtggattaccctcgaaagaaaggatacaaatccggttaggaaagacttgtaagaaatgtatgtgcttggttgtttt |
11677949 |
T |
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| Q |
252 |
gtctaccaaccctgaaagaattgtgactctttcttct |
288 |
Q |
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| T |
11677950 |
gtttaccaaccctgaaagaattgtgactcttttttct |
11677986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 152 - 288
Target Start/End: Complemental strand, 7079 - 6943
Alignment:
| Q |
152 |
gaatcttttccagtctagagactggcggattaccctcgaaagaaaggataaaaatccggttaggaaagacttgtaagaaatgtatgtgcttggttgtttt |
251 |
Q |
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||||||||||| ||||| ||| |||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7079 |
gaatcttttcccgtctaaagaatggcggattaccctcgaaagaaaggatacaaattcgattaggaaagacttgtaagaaatgtatgtgtttggttgtttt |
6980 |
T |
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| Q |
252 |
gtctaccaaccctgaaagaattgtgactctttcttct |
288 |
Q |
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| T |
6979 |
gtttaccaaccctgaaagaattgtgactcttttttct |
6943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 180 - 283
Target Start/End: Complemental strand, 34369082 - 34368979
Alignment:
| Q |
180 |
attaccctcgaaagaaaggataaaaatccggttaggaaagacttgtaagaaatgtatgtgcttggttgttttgtctaccaaccctgaaagaattgtgact |
279 |
Q |
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|||| ||| |||||||| |||| |||||| |||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| |
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| T |
34369082 |
attatccttgaaagaaatgatacaaatccacttaggaaagacttgtaagaaatgtatgtgcttcgttggtttgtttaccaaccctgaaagaattgtgact |
34368983 |
T |
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| Q |
280 |
cttt |
283 |
Q |
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|||| |
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| T |
34368982 |
cttt |
34368979 |
T |
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