View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17145_high_30 (Length: 291)
Name: NF17145_high_30
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17145_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 33005979 - 33005703
Alignment:
| Q |
1 |
aagttaccatgcaacttgaacttggtgttactaaatccatgccatcttttcgcgaatcgttgagtttgctttgttcaatttcaaccacaccggttgtagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33005979 |
aagttaccatgcaacttgaacttggtgttactaaatccatgccatcttttcgcgaatcgttgagtttgctttgttcaacttcaaccacaccggttgtagc |
33005880 |
T |
|
| Q |
101 |
aatagttgttgatccttttgcaaaccaagcattagaaatagcgaaagagttcaacatcttatctttcatgtacttccctgtttctgccatgacaacttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33005879 |
aatagttgttgatccttttgcaaaccaagcattagaaatagcgaaagagttcaacatcttatctttcatgtacttccctgtttctgccatgacaacttca |
33005780 |
T |
|
| Q |
201 |
ctacacttgcatttgccaatacttgatgaacaaatttcgggtgagtacatggatcatgttgaacctattgaaattcc |
277 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33005779 |
ctacacttgcatttgccaatacttgacgaacaagtttcgggtgagtacatggatcacgttgaacctattgaaattcc |
33005703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 34 - 208
Target Start/End: Original strand, 3707137 - 3707314
Alignment:
| Q |
34 |
aatccatgccatcttttcgcgaatcgttgagtttgctttgttcaatttcaac---cacaccggttgtagcaatagttgttgatccttttgcaaaccaagc |
130 |
Q |
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|||||||||||||| ||||| | |||||||| || || ||||||| |||||| |||||| || |||| | ||||||||||||||||||| ||||| |
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| T |
3707137 |
aatccatgccatctcttcgcaactcgttgaggttactgtgttcaacttcaacatgcacaccagtgtcagcattggttgttgatccttttgcaagtcaagc |
3707236 |
T |
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| Q |
131 |
attagaaatagcgaaagagttcaacatcttatctttcatgtacttccctgtttctgccatgacaacttcactacactt |
208 |
Q |
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| T |
3707237 |
attagaaatagctaaagacttgaacctcttatcttttgtatatttcccactttctgccatgataacttcattacactt |
3707314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 3718646 - 3718815
Alignment:
| Q |
34 |
aatccatgccatcttttcgcgaatcgttgagtttgctttgttcaatttcaac---cacaccggttgtagcaatagttgttgatccttttgcaaaccaagc |
130 |
Q |
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|||||||||||| | |||| | | |||||| || ||||||||||||||||| |||||| || |||| | ||||||||||||||||||| ||||| |
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| T |
3718646 |
aatccatgccatgtcttcggaacttgttgaggttactttgttcaatttcaacatgcacaccagtgtcagcattggttgttgatccttttgcaagtcaagc |
3718745 |
T |
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| Q |
131 |
attagaaatagcgaaagagttcaacatcttatctttcatgtacttccctgtttctgccatgacaacttca |
200 |
Q |
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| T |
3718746 |
attagaaatagctaaagacttgaacctcttatcttttatatacttcccactttctgccatgataacttca |
3718815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 105 - 249
Target Start/End: Complemental strand, 3778645 - 3778501
Alignment:
| Q |
105 |
gttgttgatccttttgcaaaccaagcattagaaatagcgaaagagttcaacatcttatctttcatgtacttccctgtttctgccatgacaacttcactac |
204 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||| ||||| || ||| ||||||||||| | |||||||| ||||||||||| ||||||||| |
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| T |
3778645 |
gttgttgatccttttgcaagtcatgcattagaaatagcaaaagacttaaacctcttatctttcgtatacttcccactttctgccatgggaacttcactct |
3778546 |
T |
|
| Q |
205 |
acttgcatttgccaatacttgatgaacaaatttcgggtgagtaca |
249 |
Q |
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|||||||| || | |||| |||||||| |||| ||||| |||| |
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| T |
3778545 |
ttttgcatttaccgacacttcatgaacaagtttcaggtgaataca |
3778501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 200
Target Start/End: Complemental strand, 3770993 - 3770889
Alignment:
| Q |
96 |
gtagcaatagttgttgatccttttgcaaaccaagcattagaaatagcgaaagagttcaacatcttatctttcatgtacttccctgtttctgccatgacaa |
195 |
Q |
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|||||| | ||||||||||||| ||||| ||||||||||||||||| ||||| | |||||||||||||| | ||||| || ||||||||||||||| |
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| T |
3770993 |
gtagcattggttgttgatccttatgcaagtcaagcattagaaatagcaaaagactagaacatcttatcttttgtatactttccactttctgccatgacaa |
3770894 |
T |
|
| Q |
196 |
cttca |
200 |
Q |
| |
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||||| |
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| T |
3770893 |
cttca |
3770889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 3700548 - 3700619
Alignment:
| Q |
120 |
gcaaaccaagcattagaaatagcgaaagagttcaacatcttatctttcatgtacttccctgtttctgccatg |
191 |
Q |
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|||| |||||||||||||||||| |||||||||||| ||||||||||||| ||||| || ||||||||||| |
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| T |
3700548 |
gcaacccaagcattagaaatagcaaaagagttcaacctcttatctttcatatactttccactttctgccatg |
3700619 |
T |
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