View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17145_high_31 (Length: 271)
Name: NF17145_high_31
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17145_high_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 43455824 - 43456059
Alignment:
| Q |
19 |
ttaaaatcaaactaaatggttgaagatggaattgtatttcatttatatataggaaaaatgtctaaaccttttctcgccggctttccaaaacactgtccct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43455824 |
ttaaaatcaaactaaatggttgaagatggaattgtatttcatttatatataggaaacacgtctaaaccttttctcgccggctttccaaaacactgtccct |
43455923 |
T |
|
| Q |
119 |
accatgagagctgctgtcaaggtgaagaaatatctgacaaggttgtaatctggactcctccaataagtcaaccattgcttccatagacatgatttaaatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43455924 |
accatgagagctgctgtcaaggtgaagaaatatctgacaaggttgtaatctggactcctccaataagtcaaccattgcttccatagacatgatttaaatt |
43456023 |
T |
|
| Q |
219 |
gtccaaaagttgactgagaaaactgagtggagaaat |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
43456024 |
gtccaaaagttgactgagaaaactgagtggagaaat |
43456059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 237
Target Start/End: Complemental strand, 4502798 - 4502660
Alignment:
| Q |
99 |
ctttccaaaacactgtccctaccatgagagctgctgtcaaggtgaagaaatatctgacaaggttgtaatctggactcctccaataagtcaaccattgctt |
198 |
Q |
| |
|
|||||||||| |||||||||| ||||||||| | ||||| ||| ||||||||||| || ||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
4502798 |
ctttccaaaatactgtccctatcatgagagcacaagccaaggagaaaaaatatctgactagattgtaatctggactcctccaatatgtcaaccactgctt |
4502699 |
T |
|
| Q |
199 |
ccatagacatgatttaaattgtccaaaagttgactgaga |
237 |
Q |
| |
|
||| ||||| ||| | ||||||||||| ||||| ||||| |
|
|
| T |
4502698 |
ccaaagacaagatgtgaattgtccaaatgttgattgaga |
4502660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University