View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17145_high_37 (Length: 250)

Name: NF17145_high_37
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17145_high_37
NF17145_high_37
[»] chr3 (3 HSPs)
chr3 (95-249)||(48567083-48567237)
chr3 (96-249)||(31795460-31795613)
chr3 (96-249)||(41081889-41082042)
[»] chr2 (3 HSPs)
chr2 (96-249)||(40304581-40304734)
chr2 (96-249)||(45500593-45500746)
chr2 (141-249)||(45492896-45493004)
[»] chr5 (3 HSPs)
chr5 (95-249)||(11771285-11771439)
chr5 (96-249)||(38625989-38626142)
chr5 (98-197)||(17552111-17552210)
[»] chr7 (6 HSPs)
chr7 (96-249)||(46246394-46246547)
chr7 (98-196)||(11748769-11748867)
chr7 (98-232)||(14781826-14781960)
chr7 (98-232)||(15231859-15231993)
chr7 (98-194)||(15136761-15136857)
chr7 (212-249)||(11748887-11748924)
[»] chr1 (1 HSPs)
chr1 (98-247)||(22683971-22684120)


Alignment Details
Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 95 - 249
Target Start/End: Complemental strand, 48567237 - 48567083
Alignment:
Q  95 cgaatttggtccctgtaatatagtagggatcacttggaaggtcgcgtacgtaactaatgccatgtcaatgattgccacgtcatgcgtcgttagacacttt 194  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||||    
T  48567237 cgaatttggtccctgtaatatagtagggatcacctggaaggccgcgtacgcaactaatgtcatgtcaacgattgccacgtcatgcgccgttagacacttt 48567138  T
Q  195 ggcannnnnnnaacagaagttgacggtagggacgaaattcaaaaggttatcaact 249  Q
    | ||       ||||||||||||||||||||||||||||||||| ||||||||||    
T  48567137 gacatttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaact 48567083  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 96 - 249
Target Start/End: Complemental strand, 31795613 - 31795460
Alignment:
Q  96 gaatttggtccctgtaatatagtagggatcacttggaaggtcgcgtacgtaactaatgccatgtcaatgattgccacgtcatgcgtcgttagacactttg 195  Q
    ||||||||||||| |||||||||||||||||| | ||||| |  ||||| ||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  31795613 gaatttggtccctctaatatagtagggatcacctagaaggccatgtacgcaactaatgccatgtcaacgattgccacgtcatgtgccgttagacactttg 31795514  T
Q  196 gcannnnnnnaacagaagttgacggtagggacgaaattcaaaaggttatcaact 249  Q
     ||       ||||||||||||||||||||||||||||||||| ||||||||||    
T  31795513 acatttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaact 31795460  T

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Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 96 - 249
Target Start/End: Complemental strand, 41082042 - 41081889
Alignment:
Q  96 gaatttggtccctgtaatatagtagggatcacttggaaggtcgcgtacgtaactaatgccatgtcaatgattgccacgtcatgcgtcgttagacactttg 195  Q
    |||||||||||||||||||||| ||||||||| ||||||| | |||||| || ||||| |||||||| ||||||||||||||| |  |||||||||||||    
T  41082042 gaatttggtccctgtaatatagcagggatcacctggaaggccacgtacgcaattaatgtcatgtcaacgattgccacgtcatgtgctgttagacactttg 41081943  T
Q  196 gcannnnnnnaacagaagttgacggtagggacgaaattcaaaaggttatcaact 249  Q
     ||       ||||||||||||||||||||||||||||||||| ||||||||||    
T  41081942 acatttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaact 41081889  T

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Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 96 - 249
Target Start/End: Original strand, 40304581 - 40304734
Alignment:
Q  96 gaatttggtccctgtaatatagtagggatcacttggaaggtcgcgtacgtaactaatgccatgtcaatgattgccacgtcatgcgtcgttagacactttg 195  Q
    |||||||||||||||||||||||||||||||| ||||||| | |||||| ||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  40304581 gaatttggtccctgtaatatagtagggatcacctggaaggccacgtacgcaactaatgccatgtcaacgattgccacgtcatgtgccgttagacactttg 40304680  T
Q  196 gcannnnnnnaacagaagttgacggtagggacgaaattcaaaaggttatcaact 249  Q
     ||       ||||||||||||||||||||||||||||||||| ||||||||||    
T  40304681 acatttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaact 40304734  T

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Target: chr2; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 96 - 249
Target Start/End: Original strand, 45500593 - 45500746
Alignment:
Q  96 gaatttggtccctgtaatatagtagggatcacttggaaggtcgcgtacgtaactaatgccatgtcaatgattgccacgtcatgcgtcgttagacactttg 195  Q
    |||||||||||||||||||||||||||||||| ||||||| | |||||| ||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  45500593 gaatttggtccctgtaatatagtagggatcacctggaaggccacgtacgcaactaatgccatgtcaacgattgccacgtcatgtgccgttagacactttg 45500692  T
Q  196 gcannnnnnnaacagaagttgacggtagggacgaaattcaaaaggttatcaact 249  Q
     ||       ||||||||||||||||||||||||||||||||| ||||||||||    
T  45500693 acatttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaact 45500746  T

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Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 141 - 249
Target Start/End: Original strand, 45492896 - 45493004
Alignment:
Q  141 tacgtaactaatgccatgtcaatgattgccacgtcatgcgtcgttagacactttggcannnnnnnaacagaagttgacggtagggacgaaattcaaaagg 240  Q
    |||| ||||||||||||||||| ||||||||||||||| | |||||||||||||| ||       ||||||||||||||||||||||||||||||||| |    
T  45492896 tacgcaactaatgccatgtcaacgattgccacgtcatgtgccgttagacactttgacatttttttaacagaagttgacggtagggacgaaattcaaaaag 45492995  T
Q  241 ttatcaact 249  Q
    |||||||||    
T  45492996 ttatcaact 45493004  T

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Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 95 - 249
Target Start/End: Complemental strand, 11771439 - 11771285
Alignment:
Q  95 cgaatttggtccctgtaatatagtagggatcacttggaaggtcgcgtacgtaactaatgccatgtcaatgattgccacgtcatgcgtcgttagacacttt 194  Q
    |||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||| |||||    
T  11771439 cgaatttggtccatgtaatatagcagggatcacttggaaggtcgtgtacgcaactaatgccatgtcaacgattgccacgtcatgcgccgttagaaacttt 11771340  T
Q  195 ggcannnnnnnaacagaagttgacggtagggacgaaattcaaaaggttatcaact 249  Q
    | ||       ||||||||||||| ||||||||||||||||||| ||||||||||    
T  11771339 gacatttttttaacagaagttgacagtagggacgaaattcaaaaagttatcaact 11771285  T

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Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 96 - 249
Target Start/End: Original strand, 38625989 - 38626142
Alignment:
Q  96 gaatttggtccctgtaatatagtagggatcacttggaaggtcgcgtacgtaactaatgccatgtcaatgattgccacgtcatgcgtcgttagacactttg 195  Q
    |||||||||||||||||||||||| ||||||| ||||||| | | |||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  38625989 gaatttggtccctgtaatatagtatggatcacctggaaggccacctacgcaactaatgccatgtcaacgattgccacgtcatgcgccgttagacactttg 38626088  T
Q  196 gcannnnnnnaacagaagttgacggtagggacgaaattcaaaaggttatcaact 249  Q
     ||       ||||||||||||||||||||||||||||||||| ||||||||||    
T  38626089 acatttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaact 38626142  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 17552210 - 17552111
Alignment:
Q  98 atttggtccctgtaatatagtagggatcacttggaaggtcgcgtacgtaactaatgccatgtcaatgattgccacgtcatgcgtcgttagacactttggc 197  Q
    ||||||||||||||||||| |||||||||| || |||| | | || | ||||||||| |||||||||||||||| ||||||||| ||||||| |||||||    
T  17552210 atttggtccctgtaatataatagggatcacctgtaaggccacatatgcaactaatgctatgtcaatgattgccatgtcatgcgttgttagaccctttggc 17552111  T

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Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 96 - 249
Target Start/End: Original strand, 46246394 - 46246547
Alignment:
Q  96 gaatttggtccctgtaatatagtagggatcacttggaaggtcgcgtacgtaactaatgccatgtcaatgattgccacgtcatgcgtcgttagacactttg 195  Q
    |||||||||||||||||||||||| ||||||| ||||||| | | |||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  46246394 gaatttggtccctgtaatatagtatggatcacctggaaggccacctacgcaactaatgccatgtcaacgattgccacgtcatgcgccgttagacactttg 46246493  T
Q  196 gcannnnnnnaacagaagttgacggtagggacgaaattcaaaaggttatcaact 249  Q
     ||       ||||||||||||||||||||||||||||||||| ||||||||||    
T  46246494 acatttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaact 46246547  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 98 - 196
Target Start/End: Original strand, 11748769 - 11748867
Alignment:
Q  98 atttggtccctgtaatatagtagggatcacttggaaggtcgcgtacgtaactaatgccatgtcaatgattgccacgtcatgcgtcgttagacactttgg 196  Q
    ||||||||||| |||||||||||||||||| || |||| | | |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11748769 atttggtccctataatatagtagggatcacctgtaaggccacatacgcaactaatgccatgtcaatgattgccacgtcatgcgccgttagacactttgg 11748867  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 232
Target Start/End: Original strand, 14781826 - 14781960
Alignment:
Q  98 atttggtccctgtaatatagtagggatcacttggaaggtcgcgtacgtaactaatgccatgtcaatgattgccacgtcatgcgtcgttagacactttggc 197  Q
    |||||||| |||||||||| |||||||||| || |||| | | |||| ||||||||  |||||||||||||||| |||||||||||||||||||||||||    
T  14781826 atttggtctctgtaatataatagggatcacctgtaaggccacatacgaaactaatgatatgtcaatgattgccatgtcatgcgtcgttagacactttggc 14781925  T
Q  198 annnnnnnaacagaagttgacggtagggacgaaat 232  Q
            ||||||||||||||  |||||||||||    
T  14781926 gtttttttaacagaagttgacgagagggacgaaat 14781960  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 232
Target Start/End: Original strand, 15231859 - 15231993
Alignment:
Q  98 atttggtccctgtaatatagtagggatcacttggaaggtcgcgtacgtaactaatgccatgtcaatgattgccacgtcatgcgtcgttagacactttggc 197  Q
    |||||||| |||||||||| |||||||||| || |||| | | |||| ||||||||  |||||||||||||||| |||||||||||||||||||||||||    
T  15231859 atttggtctctgtaatataatagggatcacctgtaaggccacatacgaaactaatgatatgtcaatgattgccatgtcatgcgtcgttagacactttggc 15231958  T
Q  198 annnnnnnaacagaagttgacggtagggacgaaat 232  Q
            ||||||||||||||  |||||||||||    
T  15231959 gtttttttaacagaagttgacgagagggacgaaat 15231993  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 194
Target Start/End: Original strand, 15136761 - 15136857
Alignment:
Q  98 atttggtccctgtaatatagtagggatcacttggaaggtcgcgtacgtaactaatgccatgtcaatgattgccacgtcatgcgtcgttagacacttt 194  Q
    ||||||||||||||||||| ||||||| |  |  ||||   | |||| ||| ||||||||||||||||||||||||||||||| | |||||||||||    
T  15136761 atttggtccctgtaatataatagggataatctataaggctacatacgcaaccaatgccatgtcaatgattgccacgtcatgcgccattagacacttt 15136857  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 212 - 249
Target Start/End: Original strand, 11748887 - 11748924
Alignment:
Q  212 agttgacggtagggacgaaattcaaaaggttatcaact 249  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  11748887 agttgacggtagggacgaaattcaaaaagttatcaact 11748924  T

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Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 98 - 247
Target Start/End: Original strand, 22683971 - 22684120
Alignment:
Q  98 atttggtccctgtaatatagtagggatcacttggaaggtcgcgtacgtaactaatgccatgtcaatgattgccacgtcatgcgtcgttagacactttggc 197  Q
    |||||||||||||||||| ||||| ||||| | ||||| | | |||| |||||||| ||||||||||||||| | ||||| || ||||||||||||||||    
T  22683971 atttggtccctgtaatattgtaggaatcacctagaaggccacatacgcaactaatgtcatgtcaatgattgctaggtcatacgccgttagacactttggc 22684070  T
Q  198 annnnnnnaacagaagttgacggtagggacgaaattcaaaaggttatcaa 247  Q
            ||||||||||||||||||||||||||||||||| ||||||||    
T  22684071 gtttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaa 22684120  T

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