View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17145_high_39 (Length: 249)
Name: NF17145_high_39
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17145_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 53956861 - 53956627
Alignment:
| Q |
1 |
taccattcaattagtataaccatatatagcctaaaaaggagaagtattaagtagtattaaataaagaaatattttatgccctatcatagtaaaacttttt |
100 |
Q |
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| T |
53956861 |
taccattcaattagtataaccatatatagcctaaaaaggagaagtattaagtagtattaaatagagaaatattttatgccctatcatagtaaaactttt- |
53956763 |
T |
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| Q |
101 |
acaaaagaaatcaatcacaaacaaccatctatatgacttttaagtcagatatgttgaaagtcaaacttttgttatatatgatctaacacttcgaaacgat |
200 |
Q |
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| T |
53956762 |
acaaaagaaatcaatcacaaacaaccatctgtatgacttttaagtcagatatattaaaaatcaaacttttgttatatatgatcgaacacttaggaacgat |
53956663 |
T |
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| Q |
201 |
tgaatgacaatgtaaaatatttttacacggttcatg |
236 |
Q |
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| T |
53956662 |
tgaatgacaatgtaaaatatttttacacggttcatg |
53956627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 10513170 - 10513208
Alignment:
| Q |
132 |
tatgacttttaagtcagatatgttgaaagtcaaactttt |
170 |
Q |
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| T |
10513170 |
tatgacttttaagttagatatgatgaaagtcaaactttt |
10513208 |
T |
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