View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17145_high_43 (Length: 227)
Name: NF17145_high_43
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17145_high_43 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 32032262 - 32032055
Alignment:
| Q |
1 |
acaactttattgcaatctaaaaccactagtaggaaataactatattaaattgatacaattaaaatacaataccaagaccttcccaaagagaaatctaagc |
100 |
Q |
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| T |
32032262 |
acaactttattgcaatctaaaaccactagtaggaaataactatattaaattgatacaattaaaatacaataccaagaccttcccaaagagaaatctaagc |
32032163 |
T |
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| Q |
101 |
ttatcttactacttattaggaaccttaataaaacccacgtgtgtagtattttctactttagtaagggtttgaagatcataagctttccaacaccttgagt |
200 |
Q |
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| T |
32032162 |
ttatcttactacttattaggaaccttaataaaacccacgtgtgtagtattttctactttagtaagggtttgaagatcataagctttccaacaccttgagt |
32032063 |
T |
|
| Q |
201 |
tatccttg |
208 |
Q |
| |
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|||||||| |
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| T |
32032062 |
tatccttg |
32032055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 32065423 - 32065196
Alignment:
| Q |
1 |
acaactttattgcaatctaaaaccactagtaggaaataactatattaaattgatacaattaaaatacaataccaa---------------------gacc |
79 |
Q |
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|||||||||||||| |||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||| |||| |
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| T |
32065423 |
acaactttattgcattctaaaacaactagtaggaaataacaaaattaaattgatacaattaaaatacaataccaaaaaaaaaaaaaaaaataccaagacc |
32065324 |
T |
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| Q |
80 |
ttcccaaagagaaatctaagcttatcttactacttattaggaaccttaataaaacccacgtgtgtagtattttctactttagtaagggtttgaagatcat |
179 |
Q |
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|||||| || |||||||||||||||||| ||||||||||| ||||||||| ||||||| ||||| ||||||| ||| ||||||| ||||||||||||| |
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| T |
32065323 |
ttcccatggaaaaatctaagcttatcttattacttattaggcaccttaatataacccacatgtgtggtattttgaactctagtaagagtttgaagatcat |
32065224 |
T |
|
| Q |
180 |
aagctttccaacaccttgagttatcctt |
207 |
Q |
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||||| ||||||||||||| | |||||| |
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| T |
32065223 |
aagctatccaacaccttgattcatcctt |
32065196 |
T |
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