View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17145_high_44 (Length: 222)
Name: NF17145_high_44
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17145_high_44 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 6807886 - 6807669
Alignment:
| Q |
1 |
caataaaggaagtcagaatagtgttcagggtatacaacggccaaagcagcttcacccggacatagctccaaacgggtatcgttagcacataatatatttc |
100 |
Q |
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| T |
6807886 |
caataaaggaagtcagaatagtgttcagggtatacaacggccaaagcagcttcacccggacatagctccaaacgggtatcgttagcacataatatatttc |
6807787 |
T |
|
| Q |
101 |
ccatttgagctttgttgttctcttcaacagacctaacaccaccgggtggacttattgccatttgaaatgttaatgttgctatgaatactgctactacact |
200 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6807786 |
ctttttgagctttgttgttctcttcaacagacctaacaccaccgggtggacttattgccatttaaaatgttaatgttgctatgaatactgctactacact |
6807687 |
T |
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| Q |
201 |
catatttcctctcatctg |
218 |
Q |
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|||||||||||||||||| |
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| T |
6807686 |
catatttcctctcatctg |
6807669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 6633866 - 6633654
Alignment:
| Q |
6 |
aaggaagtcagaatagtgttcagggtatacaacggccaaagcagcttcacccggacatagctccaaacgggtatcgttagcacataatatatttcccatt |
105 |
Q |
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|||||||||| |||||| |||||||||||| ||||||||||||||| ||||||||||||||| || ||| || || ||||||||||||||||||| || |
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| T |
6633866 |
aaggaagtcataatagtcagcagggtatacaatggccaaagcagcttcccccggacatagctccgaaagggcattgtcagcacataatatatttcccttt |
6633767 |
T |
|
| Q |
106 |
tgagctttgttgttctcttcaacagacctaacaccaccgggtggacttattgccatttgaaatgttaatgttgctatgaatactgctactacactcatat |
205 |
Q |
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| T |
6633766 |
tgagctttgttgttctcttcaacagacctaacaccaccgggtggacttattgccatttgaaatgttaatgttgctatgaatactgctactacactcatat |
6633667 |
T |
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| Q |
206 |
ttcctctcatctg |
218 |
Q |
| |
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||||||||||||| |
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| T |
6633666 |
ttcctctcatctg |
6633654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 6835691 - 6835608
Alignment:
| Q |
132 |
cctaacaccaccgggtggacttattgccatttgaaatgttaatgttgctatgaatactgctactacactcatatttcctctcat |
215 |
Q |
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|||||| |||||||||||| |||| ||||||||||| |||| |||||||||||||| |||||||| ||||||||| || ||||| |
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| T |
6835691 |
cctaacgccaccgggtggatttatagccatttgaaacgttattgttgctatgaatattgctactatactcatattccccctcat |
6835608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 217
Target Start/End: Complemental strand, 6632533 - 6632448
Alignment:
| Q |
132 |
cctaacaccaccgggtggacttattgccatttgaaatgttaatgttgctatgaatactgctactacactcatatttcctctcatct |
217 |
Q |
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|||||| ||||| |||||| ||| ||||||||||||||| |||||||||||||| |||||||||||| | ||| |||||||||| |
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| T |
6632533 |
cctaacgccacccggtggatttaaacccatttgaaatgttattgttgctatgaatattgctactacactaaaattccctctcatct |
6632448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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