View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17145_high_6 (Length: 646)
Name: NF17145_high_6
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17145_high_6 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 16 - 643
Target Start/End: Original strand, 140869 - 141495
Alignment:
| Q |
16 |
catccacaaattcagagtcttgtgatgaattctcctccatttcattttcaatattctccaccaattggtcttctaaagcactaaacctgttattgtttac |
115 |
Q |
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| T |
140869 |
catccacaaattcagagtcttgtgatgaattctcctccatttcattttcaatattctccaccaattggtcttctaaagcactaaacctgttattgtttac |
140968 |
T |
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| Q |
116 |
aactggttccacctcttgcaagatgggagttttgcttttactttgagcagatttttcctgtctttctaattctgcatcaatctctctttgcagcctctca |
215 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
140969 |
aattggttccacctcttgcaagatgggagttttgcttttactttgagcagatttttcctgtctttctaattctgcatcaatctctctttgcagcctctca |
141068 |
T |
|
| Q |
216 |
tctggcgtttcaggtgcatcaacaacatgtgcaccttcagctacttcattttgagccttcccctgaattcctctgccatccctagtttgtacatatactg |
315 |
Q |
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||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
141069 |
tctggcgtttcaggtgcattagcaacatgtgcgccttcagctacttcattttgagccttcccctgaatacctctgccatccctggtttgtacatatactg |
141168 |
T |
|
| Q |
316 |
gtttaggatttttaccatgtttcctcttattttctgcatccatcttcgcagttgtctctttcatcgggacatcagcctcttcacagtttagttttttgca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
141169 |
gtttaggatttttaccatgtttcctcttattttctgcatccatcttcgcagttgtctctttcatcgggacatcaacctcttcacagtttagttttttgca |
141268 |
T |
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| Q |
416 |
aatctccacataatgtcttaatgacttacaattcgtgcaataatcaggtaaattctcgtattcaacatccacaaaagaatgcatacccctttctttccag |
515 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
141269 |
aatctccacataatgtgctaatgacttacaattcgtgcaataatcaggtaaattctcgtattcaacatccac-aaagaatgcatacccctttctttccac |
141367 |
T |
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| Q |
516 |
caacagtttataccttattgtttgtgaaatatccatgtccattaaaaccctagcatagtgtccgaaagttctttcgatcctgggcttggccgttgttgaa |
615 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
141368 |
aaacagtttataccttattgtttgtgaaacatccatgtccactaaaaccctagcatagtgtccgaaagttctttcgatcctgggcttggccgttgttgaa |
141467 |
T |
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| Q |
616 |
tcagtacatataggagaccctatgctac |
643 |
Q |
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| T |
141468 |
tcagtacatataggagaccctaagctac |
141495 |
T |
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