View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17145_high_7 (Length: 624)

Name: NF17145_high_7
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17145_high_7
NF17145_high_7
[»] chr3 (2 HSPs)
chr3 (20-277)||(54712646-54712902)
chr3 (340-421)||(54712489-54712572)
[»] chr1 (6 HSPs)
chr1 (153-277)||(41664389-41664512)
chr1 (20-142)||(41664565-41664688)
chr1 (340-412)||(41664166-41664238)
chr1 (566-617)||(38240339-38240390)
chr1 (485-535)||(38240268-38240318)
chr1 (447-481)||(38235581-38235615)
[»] chr5 (3 HSPs)
chr5 (151-277)||(32972446-32972571)
chr5 (20-143)||(32972271-32972396)
chr5 (340-383)||(32976738-32976781)
[»] chr4 (1 HSPs)
chr4 (360-400)||(31887946-31887985)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 54712902 - 54712646
Alignment:
Q  20 aatccctcataaagcctcaaatattctttatttttgaatgaactatgcgtggttaaatgattgtagatttgaannnnnnnatgaaaactacatattccaa 119  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||| || ||||||||||||||||||||||       |||||||||||| |||||||    
T  54712902 aatccctcataaagcctcaaatattctttatttttcaatcaactatgtgtagttaaatgattgtagatttgaatttttttatgaaaactacagattccaa 54712803  T
Q  120 tttttcttataaaaattacatactagagatttgcaatatttcattgattttttctggaggagaataaatgacgaagaagattgtttcaccatttttgtat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||    
T  54712802 tttttcttataaaaattacatactagagatttgcaatatttcattgatttttt-tggaggagaataaatgacgaagaagattgtttcatcacttttgtat 54712704  T
Q  220 gatttattatagttatcaaacccattacccagaggtgtgatatgaaggaaagaggatg 277  Q
     ||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  54712703 aatttactatagttatcaaacccattacccagaggtgtgacatgaaagaaagaggatg 54712646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 340 - 421
Target Start/End: Complemental strand, 54712572 - 54712489
Alignment:
Q  340 gtgtgaaaatactataaagtccatgccacata--ggagtggtacaattaaaagggtgtccatgtctaattacccatcccatatt 421  Q
    |||| |||||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  54712572 gtgtaaaaatactataaagtccatgccacatataggagtggtacaagaaaaagggtgtccatgtctaattacccatcccatatt 54712489  T

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Target: chr1 (Bit Score: 105; Significance: 4e-52; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 153 - 277
Target Start/End: Complemental strand, 41664512 - 41664389
Alignment:
Q  153 caatatttcattgattttttctggaggagaataaatgacgaagaagattgtttcaccatttttgtatgatttattatagttatcaaacccattacccaga 252  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  41664512 caatatttcattgatttatt-tggaggagaataaatgacgaagaagattgtttcaccacttttgtatgatttactatagttatcaaacccattacccaga 41664414  T
Q  253 ggtgtgatatgaaggaaagaggatg 277  Q
    |||||||||||||||||||||||||    
T  41664413 ggtgtgatatgaaggaaagaggatg 41664389  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 41664688 - 41664565
Alignment:
Q  20 aatccctcataaagcctcaaatattctttatttttgaatgaa-ctatgcgtggttaaatgattgtagatttgaannnnnnnatgaaaactacatattcca 118  Q
    |||||||| ||||||||||||| |||||||||||| ||| || |||||||||||||||||||||||||||||||       ||||||||| |||||||||    
T  41664688 aatccctcttaaagcctcaaattttctttatttttcaatcaaactatgcgtggttaaatgattgtagatttgaatttttttatgaaaactgcatattcca 41664589  T
Q  119 atttttcttataaaaattacatac 142  Q
    ||||||||||||||||||||||||    
T  41664588 atttttcttataaaaattacatac 41664565  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 340 - 412
Target Start/End: Complemental strand, 41664238 - 41664166
Alignment:
Q  340 gtgtgaaaatactataaagtccatgccacataggagtggtacaattaaaagggtgtccatgtctaattaccca 412  Q
    ||||||||||||||||||| ||||||||||||||||||||||||   ||| ||||||||||||||||||||||    
T  41664238 gtgtgaaaatactataaagcccatgccacataggagtggtacaaaagaaatggtgtccatgtctaattaccca 41664166  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 566 - 617
Target Start/End: Original strand, 38240339 - 38240390
Alignment:
Q  566 ttcatcgtgacttacctctctctccgcccattctctacgactgcttcatctc 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38240339 ttcatcgtgacttacctctctctccgcccattctctacgactgctccatctc 38240390  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 485 - 535
Target Start/End: Original strand, 38240268 - 38240318
Alignment:
Q  485 atgacatgaatactttaaaataatgtgacatggttaaatttaagatagatt 535  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  38240268 atgacatgaatactttaaactaatgtgacatggttaaacttaagatagatt 38240318  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 481
Target Start/End: Original strand, 38235581 - 38235615
Alignment:
Q  447 cactcttaattgtacacccctttgtacacactgat 481  Q
    |||||||||||||||||||||||||||||||||||    
T  38235581 cactcttaattgtacacccctttgtacacactgat 38235615  T

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Target: chr5 (Bit Score: 103; Significance: 6e-51; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 151 - 277
Target Start/End: Original strand, 32972446 - 32972571
Alignment:
Q  151 tgcaatatttcattgattttttctggaggagaataaatgacgaagaagattgtttcaccatttttgtatgatttattatagttatcaaacccattaccca 250  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||    
T  32972446 tgcaatatttcattgatttctt-tggaggagaataaatgacgaagaagattgtttcaccacttttgtatgatttactatagttatcaaacccattacaca 32972544  T
Q  251 gaggtgtgatatgaaggaaagaggatg 277  Q
    |||||||||||||||||||||||||||    
T  32972545 gaggtgtgatatgaaggaaagaggatg 32972571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 32972271 - 32972396
Alignment:
Q  20 aatccctcataaa-gcctcaaatattctttatttttgaatgaa-ctatgcgtggttaaatgattgtagatttgaannnnnnnatgaaaactacatattcc 117  Q
    ||||||||||||| ||||||||| || ||||||||| ||| || |||||||||||||||||||||||||||||||       ||||||||| || ||| |    
T  32972271 aatccctcataaaagcctcaaattttatttatttttcaatcaaactatgcgtggttaaatgattgtagatttgaatttttttatgaaaactgcagatttc 32972370  T
Q  118 aatttttcttataaaaattacatact 143  Q
    ||||||||||||||||||||||||||    
T  32972371 aatttttcttataaaaattacatact 32972396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Original strand, 32976738 - 32976781
Alignment:
Q  340 gtgtgaaaatactataaagtccatgccacataggagtggtacaa 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  32976738 gtgtgaaaatactataaagtccatgccacataggagtggtacaa 32976781  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 31887985 - 31887946
Alignment:
Q  360 ccatgccacataggagtggtacaattaaaagggtgtccatg 400  Q
    |||||||||||||| ||||||||| ||||||||||||||||    
T  31887985 ccatgccacatagg-gtggtacaaataaaagggtgtccatg 31887946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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