View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17145_low_1 (Length: 818)
Name: NF17145_low_1
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17145_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 529; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 128 - 800
Target Start/End: Original strand, 42558141 - 42558849
Alignment:
| Q |
128 |
ttttagattccttacaaaaatcattcaaaagtttttaatgca---tttatgcctgtacgcaaagttctgcttgctgttactataaatagtacactaccag |
224 |
Q |
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| T |
42558141 |
ttttagattccttaaaaaaatcattcaaaagtttttaatgcaacatttatgcctgtacgcaaagttctgcttgctgttactataaatagtacactaccag |
42558240 |
T |
|
| Q |
225 |
ctgcagtgtcagtttttcttttcacgaataaggaatgaatgttgattggtca--------taagtactttacttctgtttccatatccatattaatggtt |
316 |
Q |
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| T |
42558241 |
ctgcagtgtcagtttttctttttacgaataaggaatgaatgttgattggtcagttgtatataagtactgaacttctgtttccatatccatattaatggtt |
42558340 |
T |
|
| Q |
317 |
ctagatcaagaattattactctaattaccataaatcaattttctgtcctcataaacaaaaagtttagtacaaaatttagtaaatgcaagtgataaacata |
416 |
Q |
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| T |
42558341 |
ctagatcaagaattattactctaattaccataaatcaattttctgtcctcataaacaaaaagtttagtacaaaatttagtaaatgcaagtgataaacata |
42558440 |
T |
|
| Q |
417 |
ccaaaattgtgatttgagagaggtggctcaagagtggaccggcaatcagtgagggtaataatcccgtaattcttagaactattattcttgttgctatgtg |
516 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
42558441 |
ccaaaattgtgatttgagagaggtgggtcaagagtggaccggcaatcagtgagggtaataatcccgtacttcttagaactattagtcttgttgctatgtg |
42558540 |
T |
|
| Q |
517 |
cagccattaatcccgctgcagttattgctccacacagcttaatcctactctgcttacaaccctgaaatagtacaaatttcatttcactcatacaaatatc |
616 |
Q |
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| T |
42558541 |
cagccattaatcccgctgcagttattgctccacacagcttaatcctactctgcttacaaccctgaaatagtacaaatttcatttcacacatacaaatatc |
42558640 |
T |
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| Q |
617 |
aaattaattggtaaaagagaga--------gggaaaaatataagctcctatgtttgataccactttggttaacaagaatcgctat--------------- |
693 |
Q |
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| T |
42558641 |
aaattaattggtaaaagagagagagagggggggaaaaatataagctcatatgtttgatatcactttggttaacaagaatcgctataattttgaagaagct |
42558740 |
T |
|
| Q |
694 |
--aatatgcggttttgaaaaaatcatggtgattagcggtaccaaacataaaatagattagggcttacatctaaaaccctctgggtgtcagtttgattgag |
791 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42558741 |
acaatatgaggttttgaaaaaatcatggtgattcgcggtaccaaacataaaatagattagggcttacatctaaaaccctcttggtgtcagtttgattgag |
42558840 |
T |
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| Q |
792 |
ttgcattct |
800 |
Q |
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| T |
42558841 |
ttgcattct |
42558849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 42558019 - 42558114
Alignment:
| Q |
8 |
tcgaagaatatcacattgccaattgagttaatttttacgaacttacgtac-nnnnnnnaatgtgtaaattatgtatacttaaatgaattttgaaag |
102 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||||||||||||||| |
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| T |
42558019 |
tcgaacaatatcgcattgccaattgagttaatttttacgaacttacatacttttttttaatacgtaaattatgtatactttaatgaattttgaaag |
42558114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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