View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17145_low_12 (Length: 460)
Name: NF17145_low_12
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17145_low_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 13 - 460
Target Start/End: Complemental strand, 47128396 - 47127955
Alignment:
| Q |
13 |
atactccctctggacttaaatatacgtaaaaaagtttatatgtacttgtctgaatttcgaccaagcacatctacattttctgcttatattttagttcaga |
112 |
Q |
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| T |
47128396 |
atactccctctggacttaaatatacgtaaaaaagtttatatgtacttgtccgaatttcgaccaagtacatctacattttctgcttatattttagttcaga |
47128297 |
T |
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| Q |
113 |
gtttacaattttaattaaaaaacttatccttgttatnnnnnnntaatatgtttcaatgtttcttgtacatataggaatttcctcctgccagcaagctgga |
212 |
Q |
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| T |
47128296 |
gtttacaattttaattaaaaaacttatccttgttataaaaaaataatatgtttcaatgtttcttgtacatgtaggaatttcctcctgccagcaagctgga |
47128197 |
T |
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| Q |
213 |
cccaagtgtttatggagaccaaaacagttacatccaagcaaagcacatagaaaatagtttagatgggcttacaatagatgaggtactaatagagatcaaa |
312 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47128196 |
cccaagtgtttatggagaccaaaacagttccatccaagcaaagcacatagaaaatagtttagatgggcttacaatagatgaggtactaatagagatcaaa |
47128097 |
T |
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| Q |
313 |
attcacttattcattgactaaaagttgtatgaaaatgaagtcaaattcatgttgaatgttataaactctacatatatcgctaacaagaatcaaacttctt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
47128096 |
attcacttattcattgactaaaagttgtatgaaaatgaagtcaaattcatgttgaatgttataatc------aatatcgctaacaagaatcaaacttctt |
47128003 |
T |
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| Q |
413 |
tatgttgcaggctcttgaaagtgataagctctatatattagatcatca |
460 |
Q |
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| T |
47128002 |
tatgttgcaggctcttgaaagtgataagctctatatattagatcatca |
47127955 |
T |
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