View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17145_low_14 (Length: 401)
Name: NF17145_low_14
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17145_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 396
Target Start/End: Original strand, 51670785 - 51671167
Alignment:
| Q |
16 |
attagaacacgaaagagaactggataaattgatgaatcacagaggatgcttttatgctacctattctacacggctgcataattgagtttttgaattagct |
115 |
Q |
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| T |
51670785 |
attagaacatgaaagagaactggataaattgatgaatcacagaggatgcttttatgctacctattctacacggctgcataattgagtttttgaattagct |
51670884 |
T |
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| Q |
116 |
cttgttctttctcatttttctgaaataaatgagaagaatggtgattgtttttatttaaaattaacaaacatgcatgagatttgacatgtttccaagtttg |
215 |
Q |
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| T |
51670885 |
cttgttctttctcatttttctgaaataaatgagaagaatggtgattgtttttatttaaaattaacaaacatgcatgagatttaacatgtttccaagtttg |
51670984 |
T |
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| Q |
216 |
cttcaaatggtggaattgctactgtgatcaatgtagagataaaagggaaatgaatgctctccnnnnnnnnnnncttcttctttctcttcagtactaaagt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
51670985 |
cttcaaatggtggaattgctactgtgatcaatgtagagataaaagtgaaatgaatgctctccttttttttttctttcttctttctcttcagtactaaagt |
51671084 |
T |
|
| Q |
316 |
ttggttgtttgtgattttgacc--nnnnnnnnnnnngtttggttgtgattttgaatgtataaatgacatatggaccccctatg |
396 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
51671085 |
ttggttgtttgtgattttgaccaaaaaaaaaaaaaagtttggttgtgattttgaatgtataaatgacatttggaccccttatg |
51671167 |
T |
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