View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17145_low_16 (Length: 381)
Name: NF17145_low_16
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17145_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 57 - 373
Target Start/End: Complemental strand, 33049978 - 33049663
Alignment:
| Q |
57 |
cacatattcaccttcctccatattcagcatctcgtattgttttcttaatgcttgaagcctcactttcttcaatttttcatatccataatacaatctctca |
156 |
Q |
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| T |
33049978 |
cacatattcaccatcctccatattca-catctcgtattgttttcttaatgcttgaagcctcactttcttcaattttttatatccataatacaatctctca |
33049880 |
T |
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| Q |
157 |
agtgtatctcaagtttctttcgcattttcacaacgcataatcttctcaaaaatatcactattcacacactagtgaatgagaaacattgcatttccatgtt |
256 |
Q |
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| T |
33049879 |
agtgtatctcaagtttctttcgcattttcacaacgcataatcttctcaaaaatatcactattcacacactagtgaatgagaaacattgcatttccatgtt |
33049780 |
T |
|
| Q |
257 |
tcttcttcgtatctttgtttgcagtttgttgaacctcagttgtgtttcttgcaagtgttggtataatatcgttcacaacatcaagaacatattggtatat |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33049779 |
tcttcttcgtatctttgtttgcagtttgttgaacctcagttgcgtttcttgcaagtgttggtataatatcgttcacaacatcaagaacatattggtatat |
33049680 |
T |
|
| Q |
357 |
gaagattaccttcatct |
373 |
Q |
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| T |
33049679 |
gaagattaccttcatct |
33049663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 91 - 373
Target Start/End: Original strand, 28452357 - 28452639
Alignment:
| Q |
91 |
tattgttttcttaatgcttgaagcctcactttcttcaatttttcatatccataatacaatctctcaagtgtatctcaagtttctttcgcattttcacaac |
190 |
Q |
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| T |
28452357 |
tattgtctccttaatgcttgaagtcccaccttcttcaactttccatctccagaatacaacctcttaatagtatctcaagtttccttcgcattttcacagt |
28452456 |
T |
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| Q |
191 |
gcataatcttctcaaaaatatcactattcacacactagtgaatgagaaacattgcatttccatgtttcttcttcgtatctttgtttgcagtttgttgaac |
290 |
Q |
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|||| |||||||| ||||| ||| ||| |||| ||||||||||||||||||| || |||| ||| ||||||| |||||| | | || |||||||||| |
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| T |
28452457 |
gcatgatcttctccaaaatctcatcattaacaccatagtgaatgagaaacattgatttcccatcttttttcttcgcatctttatgtccaatttgttgaac |
28452556 |
T |
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| Q |
291 |
ctcagttgtgtttcttgcaagtgttggtataatatcgttcacaacatcaagaacatattggtatatgaagattaccttcatct |
373 |
Q |
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||| ||||||||||||||||| |||||| | ||| ||| || |||||||||||| ||| || ||| ||||||||||||| |
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| T |
28452557 |
ctctgttgtgtttcttgcaagcattggtagaccatccttcgcagcatcaagaacatcttgataccggaatattaccttcatct |
28452639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 373
Target Start/End: Original strand, 11355747 - 11355852
Alignment:
| Q |
268 |
tctttgtttgcagtttgttgaacctcagttgtgtttcttgcaagtgttggtataatatcgttcacaacatcaagaacatattggtatatgaagattacct |
367 |
Q |
| |
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||||||||||||| ||||| || ||||||| ||||||||| | || ||||| ||| || ||||| |||||||||| ||||||| ||||||| |||| |
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| T |
11355747 |
tctttgtttgcagcttgtttcacatcagttgcgtttcttgccaatgctggtaccccatcattaacaacttcaagaacatcttggtatctgaagatcacct |
11355846 |
T |
|
| Q |
368 |
tcatct |
373 |
Q |
| |
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||||| |
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| T |
11355847 |
ccatct |
11355852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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