View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17145_low_22 (Length: 349)
Name: NF17145_low_22
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17145_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 26 - 323
Target Start/End: Complemental strand, 2782404 - 2782109
Alignment:
| Q |
26 |
ctgtaagaccaacatattctcctgcaatttgttttccaaaagtaaagaaataagaggagacgaggatgttattgtgcttatcttattagccgtttgcaaa |
125 |
Q |
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| T |
2782404 |
ctgtaagaccaacatattctcctgcaatttgttttccaaaaggaaagaaaaaagaggagacggggatgttattgtgcttatcttattagacgtttgcaaa |
2782305 |
T |
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| Q |
126 |
tgctgaaaatttgtatcacaatcaaaagtattccatggaagtatttgattttgatatacatacataacccaaccatgcaagagaaagtaaaaacattcat |
225 |
Q |
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| T |
2782304 |
tgctgaaaatttgtatcataatcaaaagtattccatggaagtatttgattttgatata----cataatccaaccatgcaagagaaagt--aaacaatcat |
2782211 |
T |
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| Q |
226 |
atnnnnnnnntcaagaatctcagcctctccccttccacccccaccaggtatattctgtgcgtgca----------tgtgcgtgtgtttgtaaattggaag |
315 |
Q |
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| T |
2782210 |
---gaaaaaatcaagaatctcagccaatccccttccaccc---ccaggtatattctgtgtgtgcacatgggtgtgtgtgtgtgtgtttgtaaattggaag |
2782117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 26 - 266
Target Start/End: Complemental strand, 2792067 - 2791834
Alignment:
| Q |
26 |
ctgtaagaccaacatattctcctgcaatttgttttccaaaagtaaagaaataagaggagacgaggatgttattgtgcttatcttattagccgtttgcaaa |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
2792067 |
ctgtaagaccaacatattctcctgcaatttgttttccaaaaggaaagaaaaaagaggagacggggatgttattgtgcttatcttattagacgtttgcaaa |
2791968 |
T |
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| Q |
126 |
tgctgaaaatttgtatcacaatcaaaagtattccatggaagtatttgattttgatatacatacataacccaaccatgcaagagaaagtaaaaacattcat |
225 |
Q |
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| T |
2791967 |
tgctgaaaatttgtatcataatcaaaagtattccaaggaggtatttgattttgat----atagataatccaaccatgcaagagaaagt--aaacattcat |
2791874 |
T |
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| Q |
226 |
atnnnnnnnntcaagaatctcagcctctccccttccacccc |
266 |
Q |
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| T |
2791873 |
at-aaaaaaatcaagaatctcagcctctcccctttcacccc |
2791834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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