View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17145_low_24 (Length: 340)

Name: NF17145_low_24
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17145_low_24
NF17145_low_24
[»] chr6 (1 HSPs)
chr6 (1-324)||(15869434-15869757)
[»] chr7 (10 HSPs)
chr7 (2-324)||(22797291-22797607)
chr7 (232-324)||(38609283-38609376)
chr7 (232-324)||(28369275-28369367)
chr7 (232-313)||(321938-322019)
chr7 (232-324)||(23839294-23839385)
chr7 (232-324)||(5578955-5579051)
chr7 (232-296)||(3120837-3120901)
chr7 (232-324)||(39894796-39894884)
chr7 (232-324)||(7932286-7932375)
chr7 (232-261)||(7553536-7553565)
[»] chr2 (14 HSPs)
chr2 (232-324)||(13220127-13220219)
chr2 (232-324)||(23220960-23221052)
chr2 (232-321)||(2007159-2007248)
chr2 (232-324)||(14931955-14932047)
chr2 (238-324)||(17625750-17625836)
chr2 (238-324)||(17670137-17670223)
chr2 (232-324)||(24201234-24201325)
chr2 (234-302)||(3304549-3304617)
chr2 (232-324)||(25432777-25432868)
chr2 (232-324)||(33896821-33896913)
chr2 (232-301)||(11493769-11493838)
chr2 (279-324)||(37469325-37469370)
chr2 (232-281)||(38500601-38500650)
chr2 (267-318)||(35942134-35942185)
[»] chr8 (10 HSPs)
chr8 (232-324)||(7066201-7066293)
chr8 (232-324)||(32593516-32593608)
chr8 (232-324)||(32690288-32690380)
chr8 (232-324)||(8471893-8471985)
chr8 (232-324)||(8472670-8472762)
chr8 (232-324)||(33493879-33493973)
chr8 (232-318)||(33085284-33085370)
chr8 (232-324)||(32051685-32051777)
chr8 (232-324)||(18471257-18471349)
chr8 (232-324)||(8194359-8194450)
[»] chr5 (8 HSPs)
chr5 (232-324)||(27828407-27828499)
chr5 (233-324)||(7518858-7518949)
chr5 (232-324)||(43432170-43432262)
chr5 (232-324)||(4446384-4446475)
chr5 (235-318)||(23498376-23498459)
chr5 (251-324)||(27827599-27827672)
chr5 (270-324)||(27827451-27827505)
chr5 (275-324)||(4445512-4445560)
[»] chr1 (6 HSPs)
chr1 (234-312)||(46859659-46859737)
chr1 (234-324)||(37827844-37827934)
chr1 (232-313)||(32755007-32755088)
chr1 (232-324)||(25104802-25104893)
chr1 (232-324)||(45395797-45395888)
chr1 (232-312)||(14613885-14613964)
[»] chr4 (15 HSPs)
chr4 (232-324)||(41223930-41224022)
chr4 (232-326)||(28501911-28502002)
chr4 (232-324)||(39437175-39437266)
chr4 (235-323)||(44897979-44898067)
chr4 (232-321)||(37078992-37079080)
chr4 (232-312)||(47442115-47442195)
chr4 (232-305)||(16184707-16184780)
chr4 (232-321)||(37078263-37078351)
chr4 (232-324)||(49529489-49529578)
chr4 (232-305)||(22383979-22384047)
chr4 (232-297)||(50853899-50853964)
chr4 (280-324)||(6848697-6848741)
chr4 (232-324)||(50848205-50848298)
chr4 (232-279)||(13188078-13188125)
chr4 (232-261)||(32476736-32476765)
[»] chr3 (9 HSPs)
chr3 (232-324)||(20269943-20270035)
chr3 (232-305)||(48596877-48596950)
chr3 (229-313)||(28767629-28767713)
chr3 (234-324)||(26218770-26218860)
chr3 (238-312)||(109637-109711)
chr3 (243-324)||(55242339-55242420)
chr3 (243-313)||(44399640-44399709)
chr3 (275-324)||(40268362-40268411)
chr3 (232-289)||(46143447-46143504)


Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 15869757 - 15869434
Alignment:
Q  1 gggattatttactaataagttgttaggactgaaaatgtgaatgtgggaccaaaagggcaaatagtacagcagttgcccaagcatgcattgtgcatcattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15869757 gggattatttactaataagttgttaggactgaaaatgtgaatgtgggaccaaaagggcaaatagtacagcagttgcccaagcatgcattgtgcatcattt 15869658  T
Q  101 tatcaggaaaatataggaatgtggaacgtggaatgcaacttggcagagggggagtctattctgtgacttgtttcggatataagggaatgtgaggagagag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15869657 tatcaggaaaatataggaatgtggaacgtggaatgcaacttggcagacggggagtctattctgtgacttgtttcggatataagggaatgtgaggagagag 15869558  T
Q  201 gggtatcattcacatctttttagttagaaacttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15869557 gggtatcattcacatctttttagttagaaacttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctag 15869458  T
Q  301 agtatgcaacttcataggctagtg 324  Q
    ||||||||||||||||||||||||    
T  15869457 agtatgcaacttcataggctagtg 15869434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 2 - 324
Target Start/End: Original strand, 22797291 - 22797607
Alignment:
Q  2 ggattatttactaataagttgttaggactgaaaatgtgaatgtgggaccaaaagggcaaatagtacagcagttgcccaagcatgcattgtgcatcatttt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||  ||||||||||  ||||    
T  22797291 ggattatttactaataagttgttaggactgaaaatgtgaatgtgggaccaaaagggcaaatagtac---------ccaagcacccattgtgcatagtttt 22797381  T
Q  102 atcaggaaaatataggaatgtggaacgtggaatgcaacttggcagagggggagtctattctgtgacttgtttcggatataagggaatgt--gaggagaga 199  Q
    || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||  |||||||||    
T  22797382 atgaggaaaatataggaatgtggagcgtggaatgcaacttggcagagggggagtctattgtgtgacttgtttccgatataagggaatgtgagaggagaga 22797481  T
Q  200 ggggtatcattc-acatctttttagttagaaact-taaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcc 297  Q
    ||||||||||||  |||||||| ||||| ||||| | | | |||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||    
T  22797482 ggggtatcattcgtcatcttttcagttaaaaactgttataataagaatctttagatatt-ctttaatggtacaactccctagattgattgttattacccc 22797580  T
Q  298 tagagtatgcaacttcataggctagtg 324  Q
    |||||||| ||||||| || |||||||    
T  22797581 tagagtatacaacttcctaagctagtg 22797607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 38609283 - 38609376
Alignment:
Q  232 ttaaaattaagaatctttagatattcc-tttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    ||||||||||||||||||||||||||| ||| || |||||||| |||| |||||||||||||||||||||||||| ||||||| ||||||||||    
T  38609283 ttaaaattaagaatctttagatattccctttaattgtacaacttcctaaattgattgttattactcctagagtatacaacttcctaggctagtg 38609376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 28369275 - 28369367
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    |||||||||||||||||||||||||||||| || |||||||| |||||||||||||  |||||||||||||||| |||||||  |||||||||    
T  28369275 ttaaaattaagaatctttagatattcctttaattgtacaacttcctagattgattgccattactcctagagtatacaacttccgaggctagtg 28369367  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 232 - 313
Target Start/End: Original strand, 321938 - 322019
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttc 313  Q
    |||||||||||||||||||||||||||||| |   ||||||| |||||||||||| |||| ||||||||||||| |||||||    
T  321938 ttaaaattaagaatctttagatattcctttaactatacaacttcctagattgattattatcactcctagagtattcaacttc 322019  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 23839294 - 23839385
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    ||||| |||||||||||||||||||||||| ||  ||||||| ||||||||||||| ||| |||||||||||||  |||||| ||||||||||    
T  23839294 ttaaagttaagaatctttagatattcctttgattatacaacttcctagattgattg-tataactcctagagtatttaacttcctaggctagtg 23839385  T

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Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 5578955 - 5579051
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtaca----actccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    |||||||||||||||||||||||||||||| || | ||     ||| ||||||||||||||||||||| ||||||||| ||||||| ||||||||||    
T  5578955 ttaaaattaagaatctttagatattcctttaattgaactgatgacttcctagattgattgttattacttctagagtatacaacttcctaggctagtg 5579051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 3120901 - 3120837
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactc 296  Q
    |||||| ||||||| ||||||||||||||| || |||||||| |||||||||||||| |||||||    
T  3120901 ttaaaagtaagaatatttagatattcctttaattgtacaacttcctagattgattgtcattactc 3120837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 39894796 - 39894884
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    ||||||||||||||||| |||||||||||| || ||| |||| |||  |||||||||||||    ||||||||| ||||||| ||||||||||    
T  39894796 ttaaaattaagaatcttcagatattcctttaattgtataacttcctgcattgattgttatt----ctagagtatacaacttcctaggctagtg 39894884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 7932286 - 7932375
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    ||||||||||||| ||  |||||||||||| || |||||||| |||||||||||||| | |||||||  ||||| ||||||| ||||||||||    
T  7932286 ttaaaattaagaa-ctacagatattcctttaattgtacaacttcctagattgattgtcactactcct--agtatacaacttcctaggctagtg 7932375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 261
Target Start/End: Original strand, 7553536 - 7553565
Alignment:
Q  232 ttaaaattaagaatctttagatattccttt 261  Q
    ||||||||||||||||||||||||||||||    
T  7553536 ttaaaattaagaatctttagatattccttt 7553565  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 13220219 - 13220127
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    |||||||||||||||||||||||||||||| || |||||||| ||||| || |||||||||||||||||||||| ||||||| ||||||||||    
T  13220219 ttaaaattaagaatctttagatattcctttaattgtacaacttcctagtttaattgttattactcctagagtatacaacttcttaggctagtg 13220127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 23220960 - 23221052
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    |||||||||||||||||||||||||||||| || |||||||| ||||||||||||| ||||||||||||||||| ||||||| || |||||||    
T  23220960 ttaaaattaagaatctttagatattcctttaattgtacaacttcctagattgattgatattactcctagagtattcaacttcctatgctagtg 23221052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 232 - 321
Target Start/End: Complemental strand, 2007248 - 2007159
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggcta 321  Q
    |||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||| ||||| ||| ||| |||||||    
T  2007248 ttaaaattaagaatctttagatattcctttaattgtacaacttcctagattgattgttattactcctatagtatacaatttcctaggcta 2007159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 14932047 - 14931955
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    ||||||||||||||||||||||||| |||| || |||||||| ||||| |||||| |||||||||||||||||| || |||| ||||||||||    
T  14932047 ttaaaattaagaatctttagatatttctttaattgtacaacttcctaggttgatttttattactcctagagtatacatcttcctaggctagtg 14931955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 238 - 324
Target Start/End: Original strand, 17625750 - 17625836
Alignment:
Q  238 ttaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    |||||||||||||||||||  ||| |  |||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  17625750 ttaagaatctttagatatttgtttaactgtacaacttcctagattgattgttattactcctagagtattcaacttcctaggctagtg 17625836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 238 - 324
Target Start/End: Original strand, 17670137 - 17670223
Alignment:
Q  238 ttaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    |||||||||||||||||||  ||| |  |||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  17670137 ttaagaatctttagatatttgtttaactgtacaacttcctagattgattgttattactcctagagtattcaacttcctaggctagtg 17670223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 24201234 - 24201325
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    ||||| |||||||||||||||||| ||||| || |||||||| ||||||||||||| ||| ||||||||||||| ||||||| ||||||||||    
T  24201234 ttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgattg-tataactcctagagtattcaacttcctaggctagtg 24201325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 234 - 302
Target Start/End: Original strand, 3304549 - 3304617
Alignment:
Q  234 aaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagag 302  Q
    ||||||| ||||||| |||||||||||| || |||||||| ||||||||||||||||||||||||||||    
T  3304549 aaaattaggaatcttcagatattcctttaattgtacaacttcctagattgattgttattactcctagag 3304617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 25432868 - 25432777
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    |||||||||| || ||||| || ||||||| || |||||||| ||||||||||||||||||||||||||||||| ||| ||| ||||||||||    
T  25432868 ttaaaattaaaaa-ctttatatgttcctttaattgtacaacttcctagattgattgttattactcctagagtatacaatttcctaggctagtg 25432777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 33896913 - 33896821
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    |||||||||||||||| ||||||||||||| || ||||| || |||||||||||| || ||||| ||||||||| | ||||| ||||||||||    
T  33896913 ttaaaattaagaatctctagatattcctttaattgtacagcttcctagattgattatttttactgctagagtatactacttcttaggctagtg 33896821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 11493769 - 11493838
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctaga 301  Q
    ||||||||||||||||| ||| ||| |||| || |||||||| ||||||||  |||||||||||||||||    
T  11493769 ttaaaattaagaatcttaagaaattactttaattgtacaacttcctagatttgttgttattactcctaga 11493838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 37469370 - 37469325
Alignment:
Q  279 gattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||    
T  37469370 gattgattgttattactcctagagtatacaacttcctaggctagtg 37469325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 38500601 - 38500650
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagat 281  Q
    |||||||||||||||||||||||||||||| || |||||||| |||||||    
T  38500601 ttaaaattaagaatctttagatattcctttaattgtacaacttcctagat 38500650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 35942185 - 35942134
Alignment:
Q  267 tacaactccctagattgattgttattactcctagagtatgcaacttcatagg 318  Q
    ||||||| ||||||||||||||||||| ||||||||||  ||||||| ||||    
T  35942185 tacaacttcctagattgattgttattattcctagagtaaacaacttcctagg 35942134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 7066293 - 7066201
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    ||||| |||||||||||||||||||||||| ||  ||||||| ||||||||||||||| ||||||||||||||| ||||||| ||||||||||    
T  7066293 ttaaagttaagaatctttagatattcctttaattatacaacttcctagattgattgttgttactcctagagtattcaacttcctaggctagtg 7066201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 32593516 - 32593608
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    |||||||||||||||| ||||||||||||| || |||||||| |||||||||||||||  |||||||||||||| ||||||| ||||||||||    
T  32593516 ttaaaattaagaatctatagatattcctttaattgtacaacttcctagattgattgttcctactcctagagtatacaacttcctaggctagtg 32593608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 32690380 - 32690288
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    ||||||||||||||||||||| |||||||| || ||| |||| ||||| ||||||||||||||||||||||||| ||||||| ||||||||||    
T  32690380 ttaaaattaagaatctttagacattcctttaattgtataacttcctaggttgattgttattactcctagagtatacaacttcctaggctagtg 32690288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 8471893 - 8471985
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    ||||| |||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||| |||||||| ||||| | ||||||||||    
T  8471893 ttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgattgttattactcgtagagtattcaactccctaggctagtg 8471985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 8472670 - 8472762
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    ||||| |||||||||||||||||| ||||| || |||||||| ||||||||| ||||||||||||| ||||||| ||||||| ||||||||||    
T  8472670 ttaaagttaagaatctttagatatccctttaattgtacaacttcctagattggttgttattactccaagagtattcaacttcttaggctagtg 8472762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 33493973 - 33493879
Alignment:
Q  232 ttaaaattaagaatctttagatat--tcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    ||||||||||||||||||||||||  |||||| ||  ||||||| |||||||||| |||||||||||||||||||| ||||||  ||||||||||    
T  33493973 ttaaaattaagaatctttagatatattcctttaattctacaacttcctagattgagtgttattactcctagagtattcaactttctaggctagtg 33493879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 232 - 318
Target Start/End: Original strand, 33085284 - 33085370
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcatagg 318  Q
    |||||||||||||||||||||| ||||||| || |||| ||| ||||||||||||| |||||||||||| |||| ||||||| ||||    
T  33085284 ttaaaattaagaatctttagattttcctttaattgtactacttcctagattgattgctattactcctagggtatacaacttcttagg 33085370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 32051777 - 32051685
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    ||||||||||||||||| ||||||||||||  |  |||||||| ||||||||||| ||||||||| |||| ||| ||||||| ||||||||||    
T  32051777 ttaaaattaagaatcttcagatattcctttggttatacaactctctagattgatttttattactcttagactatacaacttcctaggctagtg 32051685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 18471349 - 18471257
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    ||||| |||| |||||||| || ||||||| || |||||||| ||||||||||||||||||||| ||| ||||| ||||||| |||| |||||    
T  18471349 ttaaagttaacaatctttacatgttcctttaattgtacaacttcctagattgattgttattacttctaaagtatacaacttcctagggtagtg 18471257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 8194359 - 8194450
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    ||||| |||||| ||||||| ||||| ||| || |||| ||| |||||||||||||||||||||||| |||||| | ||||| ||||||||||    
T  8194359 ttaaagttaagagtctttaggtattcttttaattgtaccacttcctagattgattgttattactccttgagtattc-acttcctaggctagtg 8194450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 27828499 - 27828407
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    ||||||||| ||||||||||||||||| || || |||||||| ||||||||||||||||||||||||||| ||| ||||||| ||||||||||    
T  27828499 ttaaaattatgaatctttagatattcccttaattgtacaacttcctagattgattgttattactcctagaatatacaacttcctaggctagtg 27828407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 233 - 324
Target Start/End: Original strand, 7518858 - 7518949
Alignment:
Q  233 taaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    |||||||||| |||||||||||||||||| |  |||||||| |||||||||| |||||||||||||||||||| ||||||| ||||||||||    
T  7518858 taaaattaagcatctttagatattcctttaactgtacaacttcctagattgactgttattactcctagagtatacaacttcctaggctagtg 7518949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 43432262 - 43432170
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    ||||||||||||||||| | |||||||||| || |||||||| | ||||||||||||||||| ||||| ||||||||||||| ||||||||||    
T  43432262 ttaaaattaagaatcttcatatattcctttaattgtacaacttcgtagattgattgttattattcctaaagtatgcaacttcctaggctagtg 43432170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 4446384 - 4446475
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    ||||| |||||||| ||||||||| ||||| || |||||||| ||||||||||||| ||| ||||||||||||| ||||||| ||||||||||    
T  4446384 ttaaagttaagaatatttagatatccctttaattgtacaacttcctagattgattg-tataactcctagagtattcaacttcctaggctagtg 4446475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 318
Target Start/End: Complemental strand, 23498459 - 23498376
Alignment:
Q  235 aaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcatagg 318  Q
    ||||||||||||||||||| ||||||| || |||| ||| ||||||||||||| |||||||||| | |||| ||||||| ||||    
T  23498459 aaattaagaatctttagattttcctttaattgtactacttcctagattgattgctattactcctggggtatacaacttcttagg 23498376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 27827672 - 27827599
Alignment:
Q  251 gatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    |||||||| || || |||||||| ||||||||| ||||||| ||||||||||||| ||||||| ||||||||||    
T  27827672 gatattcccttaattgtacaacttcctagattggttgttataactcctagagtatacaacttcctaggctagtg 27827599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 27827505 - 27827451
Alignment:
Q  270 aactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    |||| ||||||||||||||| |||| |||||||||| ||||||| ||||||||||    
T  27827505 aacttcctagattgattgttcttacacctagagtatacaacttcctaggctagtg 27827451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 324
Target Start/End: Original strand, 4445512 - 4445560
Alignment:
Q  275 cctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    |||||||||||||| || ||||||||||||| ||||||| ||||||||||    
T  4445512 cctagattgattgt-ataactcctagagtattcaacttcctaggctagtg 4445560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 46859737 - 46859659
Alignment:
Q  234 aaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaactt 312  Q
    |||||||||||||||||||||||||||| || |||||||| ||||||||||||||| ||||||||||||||| ||||||    
T  46859737 aaaattaagaatctttagatattcctttaattgtacaacttcctagattgattgttgttactcctagagtatacaactt 46859659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 234 - 324
Target Start/End: Original strand, 37827844 - 37827934
Alignment:
Q  234 aaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    |||||||||||||||||||||||| ||| || |||||||| ||||||| ||||||||||||||||| | ||| ||||||| ||||||||||    
T  37827844 aaaattaagaatctttagatattcatttaattgtacaacttcctagatcgattgttattactcctacaatatacaacttcctaggctagtg 37827934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 232 - 313
Target Start/End: Complemental strand, 32755088 - 32755007
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttc 313  Q
    ||||||||||||||||| |||||||||| | || ||| |||| ||||||||||||||||||||||||||||||| |||||||    
T  32755088 ttaaaattaagaatcttcagatattcctctaattgtaaaacttcctagattgattgttattactcctagagtatacaacttc 32755007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 25104893 - 25104802
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    ||||| |||||||||||||||||| ||||| || |||||||| ||||||||||||  ||| ||||||||||||| ||||||| ||||||||||    
T  25104893 ttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgatt-atataactcctagagtattcaacttcctaggctagtg 25104802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 45395797 - 45395888
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    ||||| |||||||||||||||||| ||||| || |||| ||| ||||||||||||| ||| ||||||||||||| ||||||| ||||||||||    
T  45395797 ttaaagttaagaatctttagatatccctttaattgtacgacttcctagattgattg-tataactcctagagtattcaacttcctaggctagtg 45395888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 232 - 312
Target Start/End: Original strand, 14613885 - 14613964
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaactt 312  Q
    ||||| |||||||||||||||||| ||||| || ||||||||   ||||||||||| ||| ||||||||||||| ||||||    
T  14613885 ttaaagttaagaatctttagatatccctttaattgtacaactttttagattgattg-tataactcctagagtattcaactt 14613964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 41223930 - 41224022
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    ||||| |||||||||||||||||| ||||| |  |||||||| ||||||||||||||||||||||| ||||||| ||||||| ||||||||||    
T  41223930 ttaaagttaagaatctttagatatgcctttaactgtacaacttcctagattgattgttattactccaagagtatacaacttcctaggctagtg 41224022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 232 - 326
Target Start/End: Complemental strand, 28502002 - 28501911
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtgat 326  Q
    ||||| |||||||||||||||||||||||| || |||||||| |||||||||||||| ||||||||||   ||| ||||||| ||||||||||||    
T  28502002 ttaaagttaagaatctttagatattcctttaattgtacaacttcctagattgattgtaattactccta---tattcaacttcctaggctagtgat 28501911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 39437175 - 39437266
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    ||||| |||||||||||||||||| ||||| || |||||||| |||||||||||| |||| ||||||||||||| ||||||| ||||||||||    
T  39437175 ttaaagttaagaatctttagatatccctttaattgtacaacttcctagattgatt-ttataactcctagagtattcaacttcctaggctagtg 39437266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 323
Target Start/End: Complemental strand, 44898067 - 44897979
Alignment:
Q  235 aaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagt 323  Q
    |||||||||||||||| |||||||||| || |||||||| || |||||||||||||||||||| ||||||| |  |||| |||||||||    
T  44898067 aaattaagaatctttacatattcctttaattgtacaacttcccagattgattgttattactccaagagtatactccttcctaggctagt 44897979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 232 - 321
Target Start/End: Original strand, 37078992 - 37079080
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggcta 321  Q
    ||||| |||||||||||||||||| ||||| |  |||||||| ||||||||||||| ||| ||||||||||||| ||||||| |||||||    
T  37078992 ttaaagttaagaatctttagatatccctttaactgtacaacttcctagattgattg-tataactcctagagtattcaacttcctaggcta 37079080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 312
Target Start/End: Complemental strand, 47442195 - 47442115
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaactt 312  Q
    ||||||||||||||||||||  |||||||||||  || |||| ||||| ||||| ||||||||||||||||||| ||||||    
T  47442195 ttaaaattaagaatctttaggaattcctttcattctataacttcctagtttgatagttattactcctagagtatacaactt 47442115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 305
Target Start/End: Original strand, 16184707 - 16184780
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtat 305  Q
    |||||| ||||||||||||||||||| ||| || |||||||| ||| || |||||||||||| |||||||||||    
T  16184707 ttaaaagtaagaatctttagatattcttttaattgtacaacttcctcgactgattgttattattcctagagtat 16184780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 321
Target Start/End: Original strand, 37078263 - 37078351
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggcta 321  Q
    ||||| |||||||||||||||||| ||||| |  |||||||| ||||||||||||| ||| ||||||||||||| ||||||  |||||||    
T  37078263 ttaaagttaagaatctttagatatccctttaactgtacaacttcctagattgattg-tataactcctagagtattcaactttctaggcta 37078351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 49529489 - 49529578
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    ||||| ||||||||||||||||   ||||| || |||||||| |||||||||||||| || ||||||||||||| ||||||| ||||||||||    
T  49529489 ttaaagttaagaatctttagatc--cctttaattgtacaacttcctagattgattgt-ataactcctagagtattcaacttcctaggctagtg 49529578  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 305
Target Start/End: Original strand, 22383979 - 22384047
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtat 305  Q
    |||||||||||||||||||||||||||||     |||||||| | ||||||||||||||||| ||||| |||||    
T  22383979 ttaaaattaagaatctttagatattcctt-----gtacaacttcttagattgattgttattattcctatagtat 22384047  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 50853899 - 50853964
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcc 297  Q
    |||||||||||| |||| |||||||||||| || |||||||   ||||||||||||||||||||||    
T  50853899 ttaaaattaagattcttaagatattcctttaattgtacaacattctagattgattgttattactcc 50853964  T

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Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 6848741 - 6848697
Alignment:
Q  280 attgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||    
T  6848741 attgattgttattactcctagagtatacaacttcctaggctagtg 6848697  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 50848298 - 50848205
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattact-cctagagtatgcaacttcataggctagtg 324  Q
    ||||| |||||||||||||||||||| ||| ||  | | ||| |||||||||||||  |||||| || ||||||| ||||||| ||||||||||    
T  50848298 ttaaagttaagaatctttagatattcgtttaattattctacttcctagattgattgcgattactcccaagagtattcaacttcctaggctagtg 50848205  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 13188078 - 13188125
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctag 279  Q
    ||||||||||| |||||||||||||||||| || |||||||| |||||    
T  13188078 ttaaaattaagtatctttagatattcctttaattgtacaacttcctag 13188125  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 261
Target Start/End: Complemental strand, 32476765 - 32476736
Alignment:
Q  232 ttaaaattaagaatctttagatattccttt 261  Q
    ||||||||||||||||||||||||||||||    
T  32476765 ttaaaattaagaatctttagatattccttt 32476736  T

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Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 20270035 - 20269943
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    |||||||||||||||||||||||||||||| || |||||| | ||||||||||||||||||||||||| | ||| ||||||| |||| |||||    
T  20270035 ttaaaattaagaatctttagatattcctttaattgtacaatttcctagattgattgttattactcctacactatacaacttcctaggttagtg 20269943  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 232 - 305
Target Start/End: Complemental strand, 48596950 - 48596877
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtat 305  Q
    |||||||||||||| ||||||||||||||| ||  || |||| |||||||||||||||||||||||||||||||    
T  48596950 ttaaaattaagaatttttagatattcctttaattttataacttcctagattgattgttattactcctagagtat 48596877  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 229 - 313
Target Start/End: Complemental strand, 28767713 - 28767629
Alignment:
Q  229 aacttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttc 313  Q
    ||||||||||||| |||||||| |||||| ||| || |||||||| ||||||||||||||||||||  ||||||||| |||||||    
T  28767713 aacttaaaattaaaaatctttaaatattcatttaattgtacaacttcctagattgattgttattacaactagagtatacaacttc 28767629  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 234 - 324
Target Start/End: Original strand, 26218770 - 26218860
Alignment:
Q  234 aaaattaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    |||||||||||||||||||||||||||| || ||| |||| | ||||||||||||||||| ||||||| ||| |||| || |||| |||||    
T  26218770 aaaattaagaatctttagatattcctttaattgtataacttcatagattgattgttattattcctagaatatacaacatcctaggttagtg 26218860  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 312
Target Start/End: Complemental strand, 109711 - 109637
Alignment:
Q  238 ttaagaatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaactt 312  Q
    |||| |||||||||||||| |||| || ||||||||  |||||||||||||||||||| || | |||| ||||||    
T  109711 ttaaaaatctttagatattactttaattgtacaactttctagattgattgttattacttctcgcgtatacaactt 109637  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 55242339 - 55242420
Alignment:
Q  243 aatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    ||||| ||| ||||||||| |  |||||||| |||||||||||||||| ||  |||||||||| ||||||| |||| |||||    
T  55242339 aatctgtagttattcctttaaatgtacaacttcctagattgattgttaatatccctagagtatacaacttcctaggttagtg 55242420  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 313
Target Start/End: Complemental strand, 44399709 - 44399640
Alignment:
Q  243 aatctttagatattcctttcatggtacaactccctagattgattgttattactcctagagtatgcaacttc 313  Q
    ||||| ||||||||||||| ||  ||||||| ||||||||||||||||||  | ||||||||| |||||||    
T  44399709 aatctgtagatattcctttaattatacaacttcctagattgattgttatt-tttctagagtatacaacttc 44399640  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 324
Target Start/End: Original strand, 40268362 - 40268411
Alignment:
Q  275 cctagattgattgttattactcctagagtatgcaacttcataggctagtg 324  Q
    |||||||||||||||| || |||||||||||  ||||||||||| |||||    
T  40268362 cctagattgattgttaatattcctagagtatataacttcataggttagtg 40268411  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 46143447 - 46143504
Alignment:
Q  232 ttaaaattaagaatctttagatattcctttcatggtacaactccctagattgattgtt 289  Q
    ||||| ||||||||| |||||||||||||| ||  |||||||| ||||| ||||||||    
T  46143447 ttaaatttaagaatcgttagatattcctttaattatacaactctctagactgattgtt 46143504  T

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