View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17145_low_25 (Length: 327)
Name: NF17145_low_25
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17145_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 188 - 312
Target Start/End: Complemental strand, 20486259 - 20486128
Alignment:
| Q |
188 |
ttattacataatacaaaatctgaagaaa-------tgaagaaaagcaatgccttgcagtacaagttacttaaaatgtagtacaatagcttaagtatagta |
280 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
20486259 |
ttattacataatacaaaatctgaagaaacaaagtatgaagaaaagcaatgccttgcagtacaagttacttaaagtgtagtacaatagcttaagtatagta |
20486160 |
T |
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| Q |
281 |
gtacattcacatattagatagtacaattcctt |
312 |
Q |
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|||||||| ||||||||| ||||||||||||| |
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| T |
20486159 |
gtacattctcatattagacagtacaattcctt |
20486128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 189 - 312
Target Start/End: Complemental strand, 20481436 - 20481306
Alignment:
| Q |
189 |
tattacataatacaaaatctgaagaaa-------tgaagaaaagcaatgccttgcagtacaagttacttaaaatgtagtacaatagcttaagtatagtag |
281 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20481436 |
tattacataatacaaaatctgaagaaacaaagtatgaagaaaagcaatgccttgcagtacaagttacttaaagtgtagtacaatagcttaagtatagtag |
20481337 |
T |
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| Q |
282 |
tacattcacatattagatagtacaattcctt |
312 |
Q |
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||||||| ||||||||| ||||||||||||| |
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| T |
20481336 |
tacattctcatattagacagtacaattcctt |
20481306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 234 - 309
Target Start/End: Original strand, 28014972 - 28015047
Alignment:
| Q |
234 |
tgcagtacaagttacttaaaatgtagtacaatagcttaagtatagtagtacattcacatattagatagtacaattc |
309 |
Q |
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| T |
28014972 |
tgcagtacaagctacttaaaatgtagtacaatagcttaagtatagtagtacattcacatataagatagtacaattc |
28015047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 234 - 309
Target Start/End: Original strand, 28019795 - 28019870
Alignment:
| Q |
234 |
tgcagtacaagttacttaaaatgtagtacaatagcttaagtatagtagtacattcacatattagatagtacaattc |
309 |
Q |
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| T |
28019795 |
tgcagtacaagctacttaaaatgtagtacaatagcttaagtatagtagtacattcacatataagatagtacaattc |
28019870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 189 - 310
Target Start/End: Complemental strand, 32622163 - 32622034
Alignment:
| Q |
189 |
tattacataatacaaaatctgaagaaa-------tgaagaaaagcaatgccttgcagtacaagttacttaaaatgtagtacaatagcttaagtatagtag |
281 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
32622163 |
tattacataatacaaaatctgaagaaacaaagtatgaagaaaagcaatgccttgcagtacaagttacttaaagtgtagtacaatagcttaagtatagcag |
32622064 |
T |
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| Q |
282 |
tacattcaca-tattagatagtacaattcc |
310 |
Q |
| |
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||| ||| || ||||||||||||||||||| |
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| T |
32622063 |
tactttctcattattagatagtacaattcc |
32622034 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 234 - 309
Target Start/End: Original strand, 6339943 - 6340018
Alignment:
| Q |
234 |
tgcagtacaagttacttaaaatgtagtacaatagcttaagtatagtagtacattcacatattagatagtacaattc |
309 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6339943 |
tgcagtacaagctacttaaaatgtagtacaatagcttaagtatagtagtacattcacatataagatagtacaattc |
6340018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 234 - 309
Target Start/End: Original strand, 6344766 - 6344841
Alignment:
| Q |
234 |
tgcagtacaagttacttaaaatgtagtacaatagcttaagtatagtagtacattcacatattagatagtacaattc |
309 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6344766 |
tgcagtacaagctacttaaaatgtagtacaatagcttaagtatagtagtacattcacatataagatagtacaattc |
6344841 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 189 - 310
Target Start/End: Complemental strand, 16988600 - 16988471
Alignment:
| Q |
189 |
tattacataatacaaaatctgaagaaa-------tgaagaaaagcaatgccttgcagtacaagttacttaaaatgtagtacaatagcttaagtatagtag |
281 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
16988600 |
tattacataatacaaaatctgaagaaacaaagtatgaagaaaagcaatgccttgcagtacaagttacttaaagtgtagtacaatagcttaagtatagcag |
16988501 |
T |
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| Q |
282 |
tacattcaca-tattagatagtacaattcc |
310 |
Q |
| |
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||| ||| || ||||||||||||||||||| |
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| T |
16988500 |
tactttctcattattagatagtacaattcc |
16988471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 6 - 151
Target Start/End: Complemental strand, 11729700 - 11729556
Alignment:
| Q |
6 |
aattctttataagattccagattttacgatgatcttcttcgatttgttcagccaaaactgcgagtcttggagttttcttcgtcatttcttcattatagtc |
105 |
Q |
| |
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||||||||| | ||||||||||||||| |||||||||| | ||||||| || | ||||||| |||||| ||||||||||| | ||||| | || |||| |
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| T |
11729700 |
aattctttagcatattccagattttacggtgatcttctttgctttgttcggctagaactgcgggtcttgcagttttcttcgccgtttctactttccagtc |
11729601 |
T |
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| Q |
106 |
gaagtttcacctttcaattgctttattcctttttcgatcgggtata |
151 |
Q |
| |
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|||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
11729600 |
gaag-ttcacctttcaattgtgttattcctttttcgatcgggtata |
11729556 |
T |
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