View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17145_low_27 (Length: 323)
Name: NF17145_low_27
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17145_low_27 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 97 - 310
Target Start/End: Original strand, 31026205 - 31026418
Alignment:
| Q |
97 |
aaccaatgaatgaagcatagaaaattctaaattattcaaatttgtccagtatgagtgaagggaaccaaacaatttagaattttgtcaagtcctaaactgc |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31026205 |
aaccaatgaatgaagcatagaaaattctaaattattcaaatttgtctagtatgagtgaagggaaccaaacaatttagaattttgtcaagtcctaaactgc |
31026304 |
T |
|
| Q |
197 |
caattataaacttacaatttagatgatggtttagttagttttaacactgaaacctcacatatgatattttaaatatgcgaaagtaatataagatgtgaga |
296 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31026305 |
caattataaacttacaatttagatgatgctttaattagttttaacactaaaacctcacatatgatattttaaatatgcgaaagtaatataagatgtgaga |
31026404 |
T |
|
| Q |
297 |
tttttgataatttt |
310 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
31026405 |
tttttgataatttt |
31026418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 31026085 - 31026172
Alignment:
| Q |
12 |
atcatcatccatagaagtggtggtttctccaatcccactaggtctttgatctttactgaatgcaagtcctaaattgcttgttcagaac |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
31026085 |
atcatcatccatagaagtggtggtttctccaatcccactaggtctttgatctttactgaatgcaagtccgaaactgcttgttcagaac |
31026172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University