View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17145_low_3 (Length: 749)
Name: NF17145_low_3
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17145_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 267 - 733
Target Start/End: Original strand, 41133573 - 41134039
Alignment:
| Q |
267 |
gtatttgcagataaaggaataacaacaatgtggtaatgtgaagtactcaacaaactaatgccaaaaacataaaggaccaaatctagaagtggttttaggt |
366 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41133573 |
gtatttgcagaaaaaggaataacaacaatgtggtaatgtgaagtactcaacaaactaatgccaaaaacataaaggaccaaatctagaagtggttttaggt |
41133672 |
T |
|
| Q |
367 |
cgtgtaagtgatcaatctgtccaacgttatcctgacaaagcacaaacaaaaacataagctaaaaatagaacaaataatannnnnnnnnnngacaagtaga |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41133673 |
cgtgtaagtgatcaatctgtccaacgttatcctgacaaagcacaaacaaaaacataagctaaaaatagaacaaataatatatttttttttgacaagtaga |
41133772 |
T |
|
| Q |
467 |
acaaagaatatgtaaataacaaaatttcatatttaacaacaatnnnnnnntaaacacagagtttgttacttgttagattggttacatattattatatcaa |
566 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41133773 |
acaaagaatatgtaaataacaaaatttcatatttaacaacaataaaaaaataaacacagagtttgttacttgttagattggttacatattattatatcaa |
41133872 |
T |
|
| Q |
567 |
aagacacaccatcatgaatcatgatctaaaaatgaagaaaaattcattgataagaaaagggtgtgatgcatttgaaatcttggtgtaagaacgaagacac |
666 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41133873 |
aagacacaccatcatgaatcatgatctaaaaatgaagaaaaattcattgataagaaaagggtgtgatgcatttgaaatcttggtgtaagaacgaagacac |
41133972 |
T |
|
| Q |
667 |
gagtgaactaaagtagtaataaatgagaacataccgagatacatagaaatcagaaataagttgttta |
733 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41133973 |
gagtgaactaaagtagtaataaatgagaacataccgagatacatagaaatcagaaataagttgttta |
41134039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 33 - 208
Target Start/End: Original strand, 41133339 - 41133514
Alignment:
| Q |
33 |
taacacatacaaaacatgaaattggaccaaaaggtcctttgtataaggaaagaaagaaaagaacttacttttgatttaaggctgcgaagttcaacctgtg |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41133339 |
taacacatacaaaacatgaaattggaccaaaatgtcctttgtataaggaaagaaagaaaagaacttacttttgatttaaggctgcgaagttcaacctgtg |
41133438 |
T |
|
| Q |
133 |
taaactggctttgaagcaattgatcagatacgataacaccctcaaattttgacatcttggtaaatcaccaatacat |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41133439 |
taaactggctttgaagcaattgatcagatacaataacaccctcaaattttgacatcttggtaaatcaccaatacat |
41133514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University