View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17145_low_30 (Length: 294)
Name: NF17145_low_30
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17145_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 43455451 - 43455174
Alignment:
| Q |
1 |
ccaagcctgcacaaacacttactaaaaaa-taaaagttgtaacgaactttcaatgattgtaagccttttaatcaaaatttggtacatgttgtttattatt |
99 |
Q |
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| T |
43455451 |
ccaagcctgcacaaacacttactaaaaaaataaaagttgtaacgaactttcaatgattgtaagccttttaatcaaaatttggtacatgttgtttattatt |
43455352 |
T |
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| Q |
100 |
atgttgacatgtatagtggttccatatatgcaggttatttgtgaaataccatatgtttttggtcaaactatatttttctcagtcatagtgtatcctatgg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43455351 |
atgttgacatgtatagtggttccatatatgcaggttatttgtgaaataccatatgtttttggtcaaactatatttttctcagtcatagtgtatcctatgg |
43455252 |
T |
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| Q |
200 |
tgagctttgaatggaaagtggcgaaggtgtgttggttcttctttgtgagcttcttctctttcttgtacttcacatatt |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43455251 |
tgagctttgaatggaaagtggcgaaggtgtgttggttcttctttgtgagcttcttctctttcttgtacttcacatatt |
43455174 |
T |
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