View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17145_low_33 (Length: 271)
Name: NF17145_low_33
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17145_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 3563299 - 3563541
Alignment:
| Q |
18 |
aatgctgcgcacatctagatatgtatgaatttgtacattattgattagcctatctagaaatcatatttgacaatttttattggatggaagacgtatttaa |
117 |
Q |
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| T |
3563299 |
aatgctgcgcacatctagatatgtatgaatttgtacattattgattagcctatctagaaatcatatttgacaatttttattggatggaagacgtatttaa |
3563398 |
T |
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| Q |
118 |
tgatattatcatcacatactttggatatttgatatattttataatgaaagaagaatttctaaaagatatgtggtttgagaagcaaaggaaatactacaaa |
217 |
Q |
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| T |
3563399 |
tgatattatcatcacatactttggatatttgaaatattttataatgaaagaagaatttctaaaagatatgtggtttgagaagcaaaggaaatactacaaa |
3563498 |
T |
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| Q |
218 |
ccaatagaaacttagatatagatttcataagatattgaccttt |
260 |
Q |
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| T |
3563499 |
ccaatagaaacttagatatagatttcctaagatattgaccttt |
3563541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 37 - 260
Target Start/End: Original strand, 3568964 - 3569189
Alignment:
| Q |
37 |
tatgtatgaatttgtacattattgattagcctatctagaaatcatatttgacaatttttattggatggaagacgtatttaatgatattatcatcacatac |
136 |
Q |
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| T |
3568964 |
tatgtatgaatttgtacattattgattagcctatccagaaatctaatttgacaaattttattggatggaagacgtatttaatgatattatcattacatac |
3569063 |
T |
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| Q |
137 |
tttggatatttgatatattttataatgaaag--aagaatttctaaaagatatgtggtttgagaagcaaaggaaatactacaaaccaatagaaacttagat |
234 |
Q |
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| T |
3569064 |
tttggatatttgatatattttataatgaaagaaaataatatcttaaagatatgtggtttgagaaataaaggaaatactacaaaccaatagaaacttagat |
3569163 |
T |
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| Q |
235 |
atagatttcataagatattgaccttt |
260 |
Q |
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| T |
3569164 |
atggatttcacaagatatagaccttt |
3569189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 252
Target Start/End: Original strand, 3572148 - 3572220
Alignment:
| Q |
182 |
gatatgtggtttgagaagcaaaggaaatactacaaaccaatagaaacttagat--atagatttcataagatat |
252 |
Q |
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| T |
3572148 |
gatatgtggtttgagaagcaactgtaatgctcaaaaccaatagaaagttagatacatagatttcataagatat |
3572220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 3575426 - 3575502
Alignment:
| Q |
183 |
atatgtggtttgagaagcaaaggaaatactacaaaccaatagaaactta-gatatagatttcataagatattgacct |
258 |
Q |
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| T |
3575426 |
atatgtggtttgagatgtaagtgtaatgctccaaaccaatagaaaatcaagatatagatttcataagatatggacct |
3575502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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