View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17145_low_35 (Length: 265)
Name: NF17145_low_35
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17145_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 20511500 - 20511758
Alignment:
| Q |
1 |
acatggagtcgatgttaaccaactaatatagagatgtcaacgcatatgactaattttaaaatatatgccacatgctaggttacaagtataaagtataatt |
100 |
Q |
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| T |
20511500 |
acatggagtcgatgttaaccaactaatatagagatgtcaacgcatatgactaattttaaaatatatgccacatgctaggttacaagtataaagtataatt |
20511599 |
T |
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| Q |
101 |
aaacca-------ataaactagatgaatttgagtgttgttcacttttttaccactatgttaccctaatatttgtacaaagtttttaccaccgcttagcga |
193 |
Q |
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| T |
20511600 |
aaaccaataaactataaactatatcaatttgattgttgttcacttctttatcactgggttaccttaatatttgtacaaagtttttatcaccgcgtagcga |
20511699 |
T |
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| Q |
194 |
taattagtctccatcgagaaatttatgggatacgcaaggtgtgctctctcatctcaatt |
252 |
Q |
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| T |
20511700 |
taatttgtctccatcgaaaaatttatgggacacgtaaggtatgctctctcatcccaatt |
20511758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 20511366 - 20511499
Alignment:
| Q |
2 |
catggagtcgatgttaaccaactaatatagagatgtcaacgcatatgactaattttaaaatatatgccacatgctaggttacaagtataaagtataatta |
101 |
Q |
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| T |
20511366 |
catggagtggatattaaccaattaatatagatatgtcaatgaatatgacaaattt-aaaatatataccacatactaggttacaaatataaaatataatta |
20511464 |
T |
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| Q |
102 |
aaccaataaactagatgaatttgagtgttgttcac |
136 |
Q |
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| T |
20511465 |
aaccaataaactagatgaatttgagtgttgttcac |
20511499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 20517067 - 20517121
Alignment:
| Q |
49 |
actaattttaaaatatatgccacatgctaggttacaagtataaagtataattaaa |
103 |
Q |
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| T |
20517067 |
actaattttaaaatgtatgccacatgctaggttacaaatataaattataattaaa |
20517121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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