View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17145_low_36 (Length: 262)
Name: NF17145_low_36
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17145_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 37046534 - 37046751
Alignment:
| Q |
11 |
ttattctgactgctgtgttacctatgtttaatttgctaatgaatttgatgaaatttttcaaccttaggttaggtccatttaaattagtttcagctttcaa |
110 |
Q |
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| T |
37046534 |
ttattctgactgctgggttacctatgtttaatttgctaatgaatttgatgaaatttttcaaccttaggtaaggtccatttaaattagtttcagctttcaa |
37046633 |
T |
|
| Q |
111 |
gagcttctcaaatgatacaattatttgtttcttttatttaaactcagatca-----aggagcttctaaaaatgttgaggtatataggcaaaattcatact |
205 |
Q |
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| T |
37046634 |
gagcttctcaaatgatacaattatttttttcttttatttaaactcagatcaaggagaggagcttctaaaaatgttgaggtatataggcaaaattcatact |
37046733 |
T |
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| Q |
206 |
gttgaaatgaaactatat |
223 |
Q |
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| T |
37046734 |
gttgaaatgaaactatat |
37046751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 146
Target Start/End: Original strand, 6590555 - 6590695
Alignment:
| Q |
11 |
ttattctgactgctgtg-ttacctatgtttaatttgctaatgaatttgatgaaatttttcaaccttaggttaggtccat---ttaaattagttt-cagct |
105 |
Q |
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| T |
6590555 |
ttattctgactgttggggttacctatgtttaatttgctaatgaatttgatgaaatgtaacaaccttaggttagttccataggttaaaatagtttccatct |
6590654 |
T |
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| Q |
106 |
ttcaagagcttctcaaatgatacaattatttgtttctttta |
146 |
Q |
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| T |
6590655 |
ttcaagagcttttcaaatgagacaattatttgtttctttta |
6590695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 146
Target Start/End: Original strand, 6584492 - 6584602
Alignment:
| Q |
27 |
gttacctatgtttaatttgctaatgaatttgatgaaatttttcaaccttaggttaggtccatttaaattagtttc-agctttcaagagcttctcaaatga |
125 |
Q |
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| T |
6584492 |
gttacctatgtttaatttgctaatgaattcgatgaaatgtattaaccttagg----------ttaaattagtttctagctttcaagagcttttcaaatga |
6584581 |
T |
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| Q |
126 |
tacaattatttgtttctttta |
146 |
Q |
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| T |
6584582 |
gacaattatttgttactttta |
6584602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 6584652 - 6584703
Alignment:
| Q |
150 |
aaactcagatcaaggagcttctaaaaatgttgaggtatataggcaaaattca |
201 |
Q |
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| T |
6584652 |
aaactcagatcagggagcttctaaaaatgtcgaggcatataggcaaaattca |
6584703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 193
Target Start/End: Complemental strand, 8537640 - 8537610
Alignment:
| Q |
163 |
ggagcttctaaaaatgttgaggtatataggc |
193 |
Q |
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| T |
8537640 |
ggagcttctaaaaatgttgaggtatataggc |
8537610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 187
Target Start/End: Original strand, 21836082 - 21836112
Alignment:
| Q |
157 |
gatcaaggagcttctaaaaatgttgaggtat |
187 |
Q |
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| T |
21836082 |
gatcaaggagcttctaaaaatgttgaggtat |
21836112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 146
Target Start/End: Original strand, 21835917 - 21836038
Alignment:
| Q |
27 |
gttacctatgtttaatttgctaatgaatttgatgaaatttttcaaccttaggttaggtccat-ttaaattagtttc-agctttcaagagcttctcaaatg |
124 |
Q |
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|||||||||| || |||||||| |||| ||||||| | | |||| ||||||||||||| | ||||| ||| ||| | ||| ||||||||||||||| |
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| T |
21835917 |
gttacctatgctttgtttgctaacgaatgtgatgaattgtatcaatcttaggttaggtctaggttaaaatagattctatcttatgagagcttctcaaatg |
21836016 |
T |
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| Q |
125 |
atacaattatttgtttctttta |
146 |
Q |
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| T |
21836017 |
agacaattatctgtttctttta |
21836038 |
T |
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