View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17145_low_37 (Length: 252)
Name: NF17145_low_37
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17145_low_37 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 252
Target Start/End: Original strand, 2792086 - 2792326
Alignment:
| Q |
12 |
cagaaatgcttgtttgtggtcttgcaacacattttgtcccttcatcggtatgctacatactactatagttttgtgctttttctgctgatttgcatctttg |
111 |
Q |
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| T |
2792086 |
cagaaatgcttgcttgtggtcttgcaacacattttgtcccttcatcggtatgctacatactactagagttttgtgctttttctgctgatttgcatctttg |
2792185 |
T |
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| Q |
112 |
gtaaacaaatactaacgagtcataagaagtgtatgggaaatttagtgcagtttcgaagtatagttttgtgctttttctcctgaatcaaactcttttttca |
211 |
Q |
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| T |
2792186 |
gtaaacaaatactaacgagtcataagaagtgtatgggaaatttagtgcagtttcgaagtatagttttgtgctttttctcctgaatcaaactcttttttca |
2792285 |
T |
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| Q |
212 |
tttgaacctaacggtgtaaaaaggtcattggtggttaaact |
252 |
Q |
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| T |
2792286 |
tttgaacctaaaggggtaaaaaggtcattggtggttaaact |
2792326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 2782423 - 2782595
Alignment:
| Q |
12 |
cagaaatgcttgtttgtggtcttgcaacacattttgtcccttcatcggtatgctacatactactatagttttgtgctttttctgctgatttgcatctttg |
111 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2782423 |
cagaaatgcttgcttgtggtcttgcaacacattttgtcccttcatcggtatgctacatactactatagttttgtgctttttctgctgatttgcatctttg |
2782522 |
T |
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| Q |
112 |
gtaaacaaatactaa-------cgagtcataagaagtgt------atgggaaatttagtgcagtttcgaagta |
171 |
Q |
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| T |
2782523 |
gtaaacaaatactaactccagtcgagtcataagaagtgtacattcatgggaaatttagtgcagtttcgaagta |
2782595 |
T |
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