View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17145_low_44 (Length: 238)

Name: NF17145_low_44
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17145_low_44
NF17145_low_44
[»] chr7 (29 HSPs)
chr7 (14-174)||(17944558-17944718)
chr7 (25-104)||(37223838-37223917)
chr7 (21-138)||(3958350-3958467)
chr7 (21-122)||(13789516-13789617)
chr7 (174-220)||(37899462-37899508)
chr7 (174-220)||(37905973-37906019)
chr7 (21-122)||(8356230-8356331)
chr7 (175-220)||(37899100-37899145)
chr7 (27-113)||(25193994-25194080)
chr7 (21-122)||(37223547-37223646)
chr7 (16-113)||(23071739-23071836)
chr7 (181-220)||(22638777-22638816)
chr7 (173-220)||(31711822-31711869)
chr7 (21-112)||(45834814-45834905)
chr7 (21-114)||(25581839-25581931)
chr7 (21-77)||(23072346-23072402)
chr7 (173-220)||(35586662-35586709)
chr7 (174-220)||(10578206-10578252)
chr7 (21-78)||(7734363-7734420)
chr7 (179-220)||(33224962-33225003)
chr7 (30-102)||(2196756-2196828)
chr7 (172-211)||(3239557-3239596)
chr7 (21-105)||(25581550-25581636)
chr7 (21-99)||(23072050-23072128)
chr7 (174-220)||(35293255-35293301)
chr7 (21-111)||(45835100-45835190)
chr7 (172-200)||(11352859-11352887)
chr7 (173-213)||(35192159-35192199)
chr7 (170-202)||(40623789-40623821)
[»] chr1 (14 HSPs)
chr1 (19-106)||(4119113-4119200)
chr1 (19-122)||(31412412-31412515)
chr1 (21-122)||(32024950-32025051)
chr1 (21-122)||(32025246-32025347)
chr1 (21-122)||(32025542-32025643)
chr1 (21-113)||(9448652-9448744)
chr1 (21-124)||(34228205-34228307)
chr1 (62-122)||(34228451-34228511)
chr1 (174-220)||(45065788-45065834)
chr1 (16-105)||(51865803-51865892)
chr1 (174-220)||(43893397-43893442)
chr1 (171-200)||(29154936-29154965)
chr1 (171-200)||(49241392-49241421)
chr1 (172-200)||(40316829-40316857)
[»] chr2 (28 HSPs)
chr2 (23-122)||(26533280-26533379)
chr2 (21-113)||(38144014-38144106)
chr2 (174-220)||(6646962-6647008)
chr2 (21-122)||(26533574-26533676)
chr2 (23-100)||(14914466-14914543)
chr2 (175-220)||(32972792-32972837)
chr2 (174-220)||(2971701-2971747)
chr2 (23-121)||(23974903-23975001)
chr2 (175-220)||(6511444-6511489)
chr2 (20-71)||(27187487-27187538)
chr2 (20-71)||(27837301-27837352)
chr2 (175-220)||(30978026-30978071)
chr2 (34-122)||(31074227-31074315)
chr2 (173-220)||(33045682-33045729)
chr2 (21-107)||(27187227-27187313)
chr2 (21-107)||(27836769-27836855)
chr2 (21-107)||(27837041-27837127)
chr2 (21-122)||(44279301-44279402)
chr2 (21-113)||(21089075-21089167)
chr2 (170-200)||(6170788-6170818)
chr2 (60-138)||(8596467-8596545)
chr2 (38-104)||(14922875-14922941)
chr2 (172-201)||(40443207-40443236)
chr2 (172-200)||(3012737-3012765)
chr2 (172-200)||(13765558-13765586)
chr2 (172-200)||(23352792-23352820)
chr2 (172-200)||(32869984-32870012)
chr2 (21-109)||(44279004-44279092)
[»] chr4 (17 HSPs)
chr4 (20-114)||(38978712-38978806)
chr4 (21-122)||(19987939-19988040)
chr4 (39-113)||(7833783-7833857)
chr4 (173-220)||(2401749-2401796)
chr4 (19-106)||(8107449-8107536)
chr4 (21-104)||(19987645-19987728)
chr4 (23-112)||(18977185-18977274)
chr4 (173-220)||(42062517-42062564)
chr4 (21-122)||(18936419-18936520)
chr4 (140-169)||(35124418-35124447)
chr4 (21-78)||(41206465-41206522)
chr4 (175-211)||(10779982-10780018)
chr4 (175-211)||(10973591-10973627)
chr4 (23-99)||(11028757-11028833)
chr4 (172-200)||(17683499-17683527)
chr4 (21-53)||(22531148-22531180)
chr4 (172-220)||(51225409-51225457)
[»] chr8 (15 HSPs)
chr8 (21-120)||(15937831-15937930)
chr8 (174-220)||(3946379-3946425)
chr8 (21-106)||(21397237-21397322)
chr8 (21-106)||(21791730-21791815)
chr8 (21-113)||(24196140-24196232)
chr8 (170-215)||(32954984-32955029)
chr8 (21-76)||(22576674-22576729)
chr8 (21-122)||(21008439-21008540)
chr8 (21-106)||(21373434-21373519)
chr8 (21-106)||(34074291-34074376)
chr8 (21-106)||(34373632-34373717)
chr8 (21-106)||(34373928-34374013)
chr8 (172-220)||(12284154-12284202)
chr8 (173-220)||(36885374-36885420)
chr8 (21-87)||(26189674-26189740)
[»] scaffold0251 (1 HSPs)
scaffold0251 (21-122)||(12600-12701)
[»] scaffold0007 (1 HSPs)
scaffold0007 (21-122)||(262120-262221)
[»] chr6 (7 HSPs)
chr6 (21-122)||(30045446-30045547)
chr6 (21-119)||(4140075-4140173)
chr6 (178-220)||(28748251-28748293)
chr6 (21-122)||(1701900-1702001)
chr6 (20-106)||(32729550-32729636)
chr6 (28-113)||(1702188-1702273)
chr6 (172-200)||(6531065-6531093)
[»] chr5 (18 HSPs)
chr5 (173-220)||(8920217-8920264)
chr5 (21-122)||(15173475-15173576)
chr5 (21-113)||(36975237-36975329)
chr5 (21-112)||(22599091-22599182)
chr5 (21-119)||(16253754-16253852)
chr5 (21-111)||(22586996-22587086)
chr5 (21-111)||(36975926-36976016)
chr5 (21-122)||(10567339-10567440)
chr5 (21-106)||(15226157-15226242)
chr5 (175-220)||(21922032-21922077)
chr5 (178-220)||(15884641-15884683)
chr5 (21-106)||(10321608-10321693)
chr5 (180-216)||(35473469-35473505)
chr5 (174-220)||(29463134-29463180)
chr5 (178-220)||(41173391-41173433)
chr5 (172-200)||(10649593-10649621)
chr5 (172-200)||(10658989-10659017)
chr5 (142-170)||(42706829-42706857)
[»] chr3 (12 HSPs)
chr3 (21-81)||(15002388-15002448)
chr3 (21-122)||(3870788-3870889)
chr3 (172-220)||(42962434-42962482)
chr3 (175-220)||(54260091-54260136)
chr3 (36-111)||(15002154-15002229)
chr3 (23-73)||(7400837-7400887)
chr3 (33-79)||(13843678-13843724)
chr3 (174-211)||(30567846-30567883)
chr3 (171-220)||(31445994-31446043)
chr3 (175-220)||(36412262-36412307)
chr3 (175-219)||(28716191-28716235)
chr3 (172-200)||(51465799-51465827)
[»] scaffold0034 (1 HSPs)
scaffold0034 (175-220)||(22717-22762)
[»] scaffold0136 (1 HSPs)
scaffold0136 (172-200)||(38583-38611)
[»] scaffold0100 (1 HSPs)
scaffold0100 (175-211)||(44910-44946)


Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 17944558 - 17944718
Alignment:
Q  14 attattctgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttgg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17944558 attattctgttaggagtcccacatcgagtagataaaagtgctcgatgtggtacttaagccatgaggctctcccatctaatggactagtctttttggttgg 17944657  T
Q  114 aatctcctcgttgtctcaagtcctacactattcataagcttgtcaaggtagtttatagaaa 174  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17944658 aatctcctcattgtctcaagtcctacaatattcataagcttgtcaaggtagtttatagaaa 17944718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 37223838 - 37223917
Alignment:
Q  25 aggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctt 104  Q
    ||||||||||||| |||||||||||||||||| | | ||||||||||||||||| || ||||| ||||||||||||||||    
T  37223838 aggagtcccacattgagtagataaaagtgctcaatgaggtacttaagccatgagactctcccacctaatggactagtctt 37223917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 3958467 - 3958350
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatctcc 120  Q
    ||||||||||| |||||||||||||| ||||| || || |||||||||||| ||||||| | |||||||||  ||||||||||||| | ||||  |||||    
T  3958467 tgttaggagtctcacatcgagtagatcaaagtacttgatgtggtacttaagtcatgaggttctcccatctataggactagtcttttggattgggctctcc 3958368  T
Q  121 tcgttgtctcaagtccta 138  Q
    || ||| || ||||||||    
T  3958367 tcattgacttaagtccta 3958350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 13789617 - 13789516
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatctcc 120  Q
    ||||||||||||||||||| |||  |||||||||| || ||||||||||||||||| |||| ||||| ||| ||||||||| |||| ||||||  |||||    
T  13789617 tgttaggagtcccacatcgggtaactaaaagtgcttgatgtggtacttaagccatggggctctcccacctattggactagttttttaggttgggctctcc 13789518  T
Q  121 tc 122  Q
    ||    
T  13789517 tc 13789516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 37899508 - 37899462
Alignment:
Q  174 agaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  37899508 agaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 37899462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 37906019 - 37905973
Alignment:
Q  174 agaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  37906019 agaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 37905973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 8356331 - 8356230
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatctcc 120  Q
    ||||||||||||||||||||||| || |||||||| || |||||||||||||| ||||| | ||||| |||  |||||||| |||| ||||||  |||||    
T  8356331 tgttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctataggactagttttttgggttgggctctcc 8356232  T
Q  121 tc 122  Q
    ||    
T  8356231 tc 8356230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 37899100 - 37899145
Alignment:
Q  175 gaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  37899100 gaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 37899145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 25193994 - 25194080
Alignment:
Q  27 gagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttgg 113  Q
    ||||||||||||| ||| |||||| || | || |||||||||||||||||||||| | ||| |||||||| ||||||||| ||||||    
T  25193994 gagtcccacatcgggtaaataaaaatgtttgatgtggtacttaagccatgaggctcttccacctaatggattagtcttttgggttgg 25194080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 37223547 - 37223646
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatctcc 120  Q
    ||||||||||||||||| |||||| ||||  || || | |||||||||||||||| ||||| ||||| ||||||||||||  |||||||||||  |||||    
T  37223547 tgttaggagtcccacattgagtagttaaatatgttcaatgtggtacttaagccattaggctctcccacctaatggactag--tttttggttgggctctcc 37223644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 23071739 - 23071836
Alignment:
Q  16 tattctgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttgg 113  Q
    |||| ||||||||||||| |||||||||||| ||| || | || ||||||||||| |||||| | | ||||| ||| |||||||||||||| ||||||    
T  23071739 tattttgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtacttaaaccatgaagttctcccacctattggactagtcttttgggttgg 23071836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 22638777 - 22638816
Alignment:
Q  181 tgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22638777 tgttatttgaacaaccattttgtaggacaacttgtgggac 22638816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 31711822 - 31711869
Alignment:
Q  173 aagaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||    
T  31711822 aagaggagtgttatttgaacaaccattttgtaggataatttgtgggac 31711869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 45834905 - 45834814
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttg 112  Q
    |||||||||||||| || |||||||||||||||||| |  || |||||| ||||||| ||| |||||  |||| |||||||||||| |||||    
T  45834905 tgttaggagtcccatattgagtagataaaagtgctcaatatgatacttacgccatgatgctctcccacataatagactagtcttttgggttg 45834814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 25581839 - 25581931
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttgga 114  Q
    ||||||||||||||||| |||||||||||||  ||| | |||||||||||||||  ||||| ||||  ||||| |||||| ||||| |||||||    
T  25581839 tgttaggagtcccacattgagtagataaaagcactcaatgtggtacttaagccacaaggctctccc-cctaatagactagccttttgggttgga 25581931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 23072346 - 23072402
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatga 77  Q
    |||||||||||||||||||||||||| ||| |||| || ||||||||||| ||||||    
T  23072346 tgttaggagtcccacatcgagtagatcaaaatgcttgatgtggtacttaaaccatga 23072402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 35586662 - 35586709
Alignment:
Q  173 aagaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    |||| ||||||||||||||||| |||||||||||| ||||||||||||    
T  35586662 aagaagagtgttatttgaacaatcattttgtaggataacttgtgggac 35586709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 10578252 - 10578206
Alignment:
Q  174 agaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    |||||||||||||||||||||| ||||||||||| || |||||||||    
T  10578252 agaggagtgttatttgaacaactattttgtaggataatttgtgggac 10578206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 7734420 - 7734363
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgag 78  Q
    |||||||||||| ||||||||||||||||| |||| || |||||| |||||| |||||    
T  7734420 tgttaggagtcctacatcgagtagataaaaatgcttgatgtggtatttaagcaatgag 7734363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 33225003 - 33224962
Alignment:
Q  179 agtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    |||||||||||||||| |||||||||||| ||||||||||||    
T  33225003 agtgttatttgaacaatcattttgtaggataacttgtgggac 33224962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 2196756 - 2196828
Alignment:
Q  30 tcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtc 102  Q
    |||||||||||||||||||||  ||| || |||||||||||| |||||| || | ||| ||||| ||||||||    
T  2196756 tcccacatcgagtagataaaaaagcttgatgtggtacttaagtcatgagactcttccacctaatagactagtc 2196828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 3239596 - 3239557
Alignment:
Q  172 aaagaggagtgttatttgaacaaccattttgtaggacaac 211  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  3239596 aaagaggaatgttatttgaacaaccattttataggacaac 3239557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 25581550 - 25581636
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtg--gtacttaagccatgaggctttcccatctaatggactagtcttt 105  Q
    |||||||||||||| || |||||||||||||  ||| | |||  |||||||||| |||||||| ||||| |||| |||||| |||||    
T  25581550 tgttaggagtcccaaattgagtagataaaagcactcaatgtggtgtacttaagcaatgaggctctcccacctaacggactattcttt 25581636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 23072050 - 23072128
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggacta 99  Q
    |||||||||||||||||||||||||| ||| ||||  | ||| ||||||| |||||| | | ||||| ||| |||||||    
T  23072050 tgttaggagtcccacatcgagtagatcaaaatgcttaatgtgatacttaaaccatgaagttctcccacctattggacta 23072128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 35293301 - 35293255
Alignment:
Q  174 agaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    ||||||||||||||| |||||||||||| | ||| ||||||||||||    
T  35293301 agaggagtgttatttaaacaaccattttatgggataacttgtgggac 35293255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 45835190 - 45835100
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggtt 111  Q
    ||||| ||||||| ||| ||||||||||||||| || | |||||  |||||||| ||| || ||| | ||||||||||||| |||| ||||    
T  45835190 tgttatgagtcccgcattgagtagataaaagtgttcaatgtggtctttaagccacgagactctcctacctaatggactagtattttaggtt 45835100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 200
Target Start/End: Original strand, 11352859 - 11352887
Alignment:
Q  172 aaagaggagtgttatttgaacaaccattt 200  Q
    |||||||||||||||||||||||||||||    
T  11352859 aaagaggagtgttatttgaacaaccattt 11352887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 35192159 - 35192199
Alignment:
Q  173 aagaggagtgttatttgaacaaccattttgtaggacaactt 213  Q
    ||||||||||||||||||||||  ||||| |||||||||||    
T  35192159 aagaggagtgttatttgaacaattattttataggacaactt 35192199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 40623789 - 40623821
Alignment:
Q  170 agaaagaggagtgttatttgaacaaccattttg 202  Q
    |||||||||||||||||||||||||||| ||||    
T  40623789 agaaagaggagtgttatttgaacaaccaatttg 40623821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 4119113 - 4119200
Alignment:
Q  19 tctgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttt 106  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||| | ||||||||||||||||    
T  4119113 tctgttaggagtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtctttt 4119200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 31412515 - 31412412
Alignment:
Q  19 tctgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatct 118  Q
    |||||||||||||||||||||||||||| ||| |||| || |||||||||||||| ||||| | ||||| ||| |  ||||||||||| ||||||| |||    
T  31412515 tctgttaggagtcccacatcgagtagatcaaaatgcttgatgtggtacttaagccgtgaggttctcccacctattcaactagtcttttgggttggactct 31412416  T
Q  119 cctc 122  Q
    ||||    
T  31412415 cctc 31412412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 32024950 - 32025051
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatctcc 120  Q
    ||||||||||||||||||||||| || |||||||| || |||||||||||||| ||||| | ||||| ||| ||||||||| |||| ||||||  |||||    
T  32024950 tgttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcc 32025049  T
Q  121 tc 122  Q
    ||    
T  32025050 tc 32025051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 32025246 - 32025347
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatctcc 120  Q
    ||||||||||||||||||||||| || |||||||| || |||||||||||||| ||||| | ||||| ||| ||||||||| |||| ||||||  |||||    
T  32025246 tgttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcc 32025345  T
Q  121 tc 122  Q
    ||    
T  32025346 tc 32025347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 32025542 - 32025643
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatctcc 120  Q
    ||||||||||||||||||||||| || |||||||| || |||||||||||||| ||||| | ||||| ||| ||||||||| |||| ||||||  |||||    
T  32025542 tgttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcc 32025641  T
Q  121 tc 122  Q
    ||    
T  32025642 tc 32025643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 9448744 - 9448652
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttgg 113  Q
    ||||||||||||||||||||||| || |||||||| || |||||||||||||| ||||| | ||||| ||| ||||||||| |||| ||||||    
T  9448744 tgttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgg 9448652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 34228307 - 34228205
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatctcc 120  Q
    ||||||||||||||||| || |||||||||||||||   ||||||| |||||||||||||| ||| | |||||||||| |||||||  |||||  |||||    
T  34228307 tgttaggagtcccacattgactagataaaagtgctcagtgtggtac-taagccatgaggctctccgacctaatggactggtcttttgagttgggctctcc 34228209  T
Q  121 tcgt 124  Q
    ||||    
T  34228208 tcgt 34228205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 34228511 - 34228451
Alignment:
Q  62 ggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatctcctc 122  Q
    ||||||||||| |||||||| |||||  ||||||||||||||||| ||||||| |||||||    
T  34228511 ggtacttaagctatgaggctctcccacttaatggactagtcttttgggttggactctcctc 34228451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 45065788 - 45065834
Alignment:
Q  174 agaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    |||| |||||||||||||||| ||||||||| |||||||||||||||    
T  45065788 agagtagtgttatttgaacaatcattttgtaagacaacttgtgggac 45065834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 51865803 - 51865892
Alignment:
Q  16 tattctgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtcttt 105  Q
    |||||||||||||||||||||| |||||||  | |||| | || |||||||||||| ||||| | | ||||| ||| | |||||||||||    
T  51865803 tattctgttaggagtcccacatagagtagaacatagtgtttgatgtggtacttaagtcatgaagttctcccacctattagactagtcttt 51865892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 43893442 - 43893397
Alignment:
Q  174 agaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||    
T  43893442 agaggagtgttatttgaacaaccatttt-acggacaacttgtgggac 43893397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 200
Target Start/End: Complemental strand, 29154965 - 29154936
Alignment:
Q  171 gaaagaggagtgttatttgaacaaccattt 200  Q
    ||||||||||||||||||||||||||||||    
T  29154965 gaaagaggagtgttatttgaacaaccattt 29154936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 200
Target Start/End: Original strand, 49241392 - 49241421
Alignment:
Q  171 gaaagaggagtgttatttgaacaaccattt 200  Q
    ||||||||||||||||||||||||||||||    
T  49241392 gaaagaggagtgttatttgaacaaccattt 49241421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 200
Target Start/End: Original strand, 40316829 - 40316857
Alignment:
Q  172 aaagaggagtgttatttgaacaaccattt 200  Q
    |||||||||||||||||||||||||||||    
T  40316829 aaagaggagtgttatttgaacaaccattt 40316857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 122
Target Start/End: Original strand, 26533280 - 26533379
Alignment:
Q  23 ttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatctcctc 122  Q
    |||||||||||||||||||||||| |||||||| || ||||||||||| |||||||| | ||||| |||||||||||||||||| ||||||  |||||||    
T  26533280 ttaggagtcccacatcgagtagatcaaagtgcttgatgtggtacttaaaccatgaggttctcccacctaatggactagtcttttgggttgggctctcctc 26533379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 38144014 - 38144106
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttgg 113  Q
    ||||||||||||||||||||||| || |||||||| || |||||||||||||| ||||| | ||||| ||| ||||||||| |||| ||||||    
T  38144014 tgttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgg 38144106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 6647008 - 6646962
Alignment:
Q  174 agaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  6647008 agaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 6646962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 26533574 - 26533676
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtactt-aagccatgaggctttcccatctaatggactagtctttttggttggaatctc 119  Q
    |||| ||||||||||||||||||||| |||||||| || ||||||||| || |||||||| | ||||| ||| |||||||||||||| ||||||  ||||    
T  26533574 tgtttggagtcccacatcgagtagatcaaagtgcttgatgtggtacttaaaaccatgaggttctcccacctattggactagtcttttgggttgggctctc 26533673  T
Q  120 ctc 122  Q
    |||    
T  26533674 ctc 26533676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 14914543 - 14914466
Alignment:
Q  23 ttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactag 100  Q
    |||||||||  ||||||||||||||||| || ||||||||||||||||| |||||| |||||| | ||||||||||||    
T  14914543 ttaggagtcttacatcgagtagataaaaatgttcgacgtggtacttaagtcatgagactttcctacctaatggactag 14914466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 32972792 - 32972837
Alignment:
Q  175 gaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  32972792 gaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 32972837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 2971701 - 2971747
Alignment:
Q  174 agaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  2971701 agaggagtgttatttgaacaaccattttgtaagacaacttgtgggac 2971747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 23974903 - 23975001
Alignment:
Q  23 ttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatctcct 121  Q
    |||||||| ||||||||||||| ||||||||||| | ||||||||||||||||||| || |  || |||||| |||||| | || ||||||| ||||||    
T  23974903 ttaggagttccacatcgagtagttaaaagtgctcaatgtggtacttaagccatgagactctttcacctaatgtactagtttgttgggttggactctcct 23975001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 6511444 - 6511489
Alignment:
Q  175 gaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  6511444 gaggaatgttatttgaacaaccattttgtaggacaacttgtgggac 6511489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 27187538 - 27187487
Alignment:
Q  20 ctgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaag 71  Q
    ||||||||||||||||||||||||||| |||||||| || ||||||||||||    
T  27187538 ctgttaggagtcccacatcgagtagatcaaagtgcttgatgtggtacttaag 27187487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 27837352 - 27837301
Alignment:
Q  20 ctgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaag 71  Q
    ||||||||||||||||||||||||||| |||||||| || ||||||||||||    
T  27837352 ctgttaggagtcccacatcgagtagatcaaagtgcttgatgtggtacttaag 27837301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 30978071 - 30978026
Alignment:
Q  175 gaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||    
T  30978071 gaggagtgttatttgaacaaccattttatgggacaacttgtgggac 30978026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 31074227 - 31074315
Alignment:
Q  34 acatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatctcctc 122  Q
    ||||||||||||| |||||  | || |||||||||||||||||||| | ||  ||||| |||||||||||||| ||||||  |||||||    
T  31074227 acatcgagtagatcaaagtatttgatgtggtacttaagccatgaggttctcatatctattggactagtcttttgggttgggctctcctc 31074315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 33045729 - 33045682
Alignment:
Q  173 aagaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    |||||||||||||||| ||||||||||||||| ||||| |||||||||    
T  33045729 aagaggagtgttatttaaacaaccattttgtatgacaatttgtgggac 33045682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 27187313 - 27187227
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtcttttt 107  Q
    ||||||||||| |||||||||||||| ||| | || || ||| |||||||| ||||||| |||| || ||| |||| ||||||||||    
T  27187313 tgttaggagtctcacatcgagtagatcaaactacttgatgtgatacttaagtcatgaggttttctcacctattggagtagtcttttt 27187227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 27836855 - 27836769
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtcttttt 107  Q
    ||||||||||| |||||||||||||| ||| | || || ||| |||||||| ||||||| |||| || ||| |||| ||||||||||    
T  27836855 tgttaggagtctcacatcgagtagatcaaactacttgatgtgatacttaagtcatgaggttttctcacctattggagtagtcttttt 27836769  T

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Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 27837127 - 27837041
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtcttttt 107  Q
    ||||||||||| |||||||||||||| ||| | || || ||| |||||||| ||||||| |||| || ||| |||| ||||||||||    
T  27837127 tgttaggagtctcacatcgagtagatcaaactacttgatgtgatacttaagtcatgaggttttctcacctattggagtagtcttttt 27837041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 44279301 - 44279402
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatctcc 120  Q
    |||||||||||||||||| ||||||| |||||| | || | ||||||||| || ||||| | ||||| ||| | ||||| |||||| ||||||  |||||    
T  44279301 tgttaggagtcccacatcaagtagatcaaagtgtttgatgcggtacttaaaccttgaggttctcccacctattagactaatcttttgggttgggctctcc 44279400  T
Q  121 tc 122  Q
    ||    
T  44279401 tc 44279402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 21089075 - 21089167
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttgg 113  Q
    ||||||||||||||||||||||| |||| |||| |  | |||||| |||| |||| ||||| | | | |||||||| ||||||||| ||||||    
T  21089075 tgttaggagtcccacatcgagtaaataagagtgttttatgtggtatttaaaccatcaggctctgcgacctaatggattagtcttttgggttgg 21089167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 200
Target Start/End: Complemental strand, 6170818 - 6170788
Alignment:
Q  170 agaaagaggagtgttatttgaacaaccattt 200  Q
    |||||||||||||||||||||||||||||||    
T  6170818 agaaagaggagtgttatttgaacaaccattt 6170788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 8596545 - 8596467
Alignment:
Q  60 gtggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatctcctcgttgtctcaagtccta 138  Q
    |||||||||||||| ||||| | ||||| ||| ||||||||| |||| ||||||  ||||||||| | || ||||||||    
T  8596545 gtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcctcgtgggcttaagtccta 8596467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 14922941 - 14922875
Alignment:
Q  38 cgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctt 104  Q
    |||||||||||||  ||||||||||||| |||| |||||| |||||| ||| ||||| |||| ||||    
T  14922941 cgagtagataaaaaagctcgacgtggtatttaaaccatgatgctttcacatttaatgaactactctt 14922875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 201
Target Start/End: Complemental strand, 40443236 - 40443207
Alignment:
Q  172 aaagaggagtgttatttgaacaaccatttt 201  Q
    ||||||||||||||||||||||||||||||    
T  40443236 aaagaggagtgttatttgaacaaccatttt 40443207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 200
Target Start/End: Original strand, 3012737 - 3012765
Alignment:
Q  172 aaagaggagtgttatttgaacaaccattt 200  Q
    |||||||||||||||||||||||||||||    
T  3012737 aaagaggagtgttatttgaacaaccattt 3012765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 13765586 - 13765558
Alignment:
Q  172 aaagaggagtgttatttgaacaaccattt 200  Q
    |||||||||||||||||||||||||||||    
T  13765586 aaagaggagtgttatttgaacaaccattt 13765558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 200
Target Start/End: Original strand, 23352792 - 23352820
Alignment:
Q  172 aaagaggagtgttatttgaacaaccattt 200  Q
    |||||||||||||||||||||||||||||    
T  23352792 aaagaggagtgttatttgaacaaccattt 23352820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 32870012 - 32869984
Alignment:
Q  172 aaagaggagtgttatttgaacaaccattt 200  Q
    |||||||||||||||||||||||||||||    
T  32870012 aaagaggagtgttatttgaacaaccattt 32869984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 44279004 - 44279092
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttgg 109  Q
    ||||||||||| |||||| | ||||| | ||||   || ||||||||||| |||||||| | ||||| ||| |||| ||||||||||||    
T  44279004 tgttaggagtctcacatcaaatagatcatagtgtatgatgtggtacttaaaccatgaggttctcccacctattggagtagtctttttgg 44279092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 38978712 - 38978806
Alignment:
Q  20 ctgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttgga 114  Q
    |||||||||||||||||| ||||||||||||||| | || ||||||||||| |||||||||| | ||| |||||||| |||||||||||||||||    
T  38978712 ctgttaggagtcccacatggagtagataaaagtgtttgatgtggtacttaaaccatgaggctcttccacctaatggattagtctttttggttgga 38978806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 19987939 - 19988040
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatctcc 120  Q
    |||||||||||||||||||||||||| ||| |||| || |||||||||||||||||||| | ||||| ||| |||||||||||| | ||||||  |||||    
T  19987939 tgttaggagtcccacatcgagtagatcaaaatgcttgatgtggtacttaagccatgaggttctcccacctattggactagtcttctgggttgggctctcc 19988038  T
Q  121 tc 122  Q
    ||    
T  19988039 tc 19988040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 7833857 - 7833783
Alignment:
Q  39 gagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttgg 113  Q
    ||||||||||||||||| || |||||||||||| ||||||||| ||||| |||||||||||||||||| ||||||    
T  7833857 gagtagataaaagtgcttgatgtggtacttaagtcatgaggctctcccacctaatggactagtcttttgggttgg 7833783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 2401796 - 2401749
Alignment:
Q  173 aagaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2401796 aagaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 2401749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 8107536 - 8107449
Alignment:
Q  19 tctgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttt 106  Q
    |||||||||||||||||||||||||||| |||||||| || ||||||||||||| |||||| | ||||||| | || ||||| |||||    
T  8107536 tctgttaggagtcccacatcgagtagatcaaagtgcttgatgtggtacttaagctatgaggttctcccatccattgaactagcctttt 8107449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 19987645 - 19987728
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctt 104  Q
    |||||||||||||||||||||||||| ||| || | || |||||||||||||||||||| | ||||| ||| ||||||||||||    
T  19987645 tgttaggagtcccacatcgagtagatcaaaatgtttgatgtggtacttaagccatgaggttctcccacctattggactagtctt 19987728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 18977185 - 18977274
Alignment:
Q  23 ttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttg 112  Q
    |||||||||||| |||||| ||||||||||| |||||||||||||||||| || || |||||  |  |||| |||||||||||| |||||    
T  18977185 ttaggagtcccatatcgagcagataaaagtgttcgacgtggtacttaagcgataagtctttctaacataatagactagtcttttcggttg 18977274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 42062517 - 42062564
Alignment:
Q  173 aagaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||    
T  42062517 aagaggagtgttatttgaacaaccattttatgggacaacttgtgggac 42062564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 18936419 - 18936520
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatctcc 120  Q
    |||||||||||| ||||||| || ||||| ||| | ||  |||||||||| ||||||| |||||| | ||||||||||| | |||| ||||| | |||||    
T  18936419 tgttaggagtcctacatcgattaaataaacgtgtttgatttggtacttaaaccatgagactttcctacctaatggactaattttttgggttgaactctcc 18936518  T
Q  121 tc 122  Q
    ||    
T  18936519 tc 18936520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 169
Target Start/End: Original strand, 35124418 - 35124447
Alignment:
Q  140 actattcataagcttgtcaaggtagtttat 169  Q
    ||||||||||||||||||||||||||||||    
T  35124418 actattcataagcttgtcaaggtagtttat 35124447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 41206465 - 41206522
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgag 78  Q
    ||||||| |||||| |||||||||||||||||| | || |||||| ||||| ||||||    
T  41206465 tgttaggcgtcccatatcgagtagataaaagtgtttgatgtggtatttaagtcatgag 41206522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 10779982 - 10780018
Alignment:
Q  175 gaggagtgttatttgaacaaccattttgtaggacaac 211  Q
    ||||||||||||||||||||||||||| | |||||||    
T  10779982 gaggagtgttatttgaacaaccattttatgggacaac 10780018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 10973591 - 10973627
Alignment:
Q  175 gaggagtgttatttgaacaaccattttgtaggacaac 211  Q
    ||||||||||||||||||||||||||| | |||||||    
T  10973591 gaggagtgttatttgaacaaccattttatgggacaac 10973627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 11028757 - 11028833
Alignment:
Q  23 ttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggacta 99  Q
    ||||||||| ||||||||||| ||||||||| | || ||| || |||| |||||||| | || || |||||||||||    
T  11028757 ttaggagtctcacatcgagtaaataaaagtgtttgatgtgatatttaaaccatgaggatctctcacctaatggacta 11028833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 17683527 - 17683499
Alignment:
Q  172 aaagaggagtgttatttgaacaaccattt 200  Q
    |||||||||||||||||||||||||||||    
T  17683527 aaagaggagtgttatttgaacaaccattt 17683499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 22531180 - 22531148
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtg 53  Q
    ||||||||||||||||||||| |||||||||||    
T  22531180 tgttaggagtcccacatcgagcagataaaagtg 22531148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 51225409 - 51225457
Alignment:
Q  172 aaagaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    |||||| ||||||||||||||||| ||||| ||  ||||||||||||||    
T  51225409 aaagagaagtgttatttgaacaactattttataaaacaacttgtgggac 51225457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 15937930 - 15937831
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatctcc 120  Q
    |||||| |||||||||||| ||| |||||| |||| || ||||||||||||||||||| || ||||| |||||||||||||||||| |||||| ||||||    
T  15937930 tgttagaagtcccacatcgggtatataaaattgcttgatgtggtacttaagccatgagtctctcccacctaatggactagtcttttgggttgggatctcc 15937831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 3946425 - 3946379
Alignment:
Q  174 agaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3946425 agaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 3946379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 21397237 - 21397322
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttt 106  Q
    ||||||||||||||| ||||||||||||||||| | || |||||| |||| ||| | |||| ||||| ||||||||||||||||||    
T  21397237 tgttaggagtcccacgtcgagtagataaaagtgattgatgtggtatttaaaccacggggctctcccacctaatggactagtctttt 21397322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 21791730 - 21791815
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttt 106  Q
    ||||||||||||||| ||||||||||||||||| | || |||||| |||| ||| | |||| ||||| ||||||||||||||||||    
T  21791730 tgttaggagtcccacgtcgagtagataaaagtgattgatgtggtatttaaaccacggggctctcccacctaatggactagtctttt 21791815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 24196232 - 24196140
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttgg 113  Q
    |||||||||| ||||||||| |||||||||||  |||||||||| ||||||| ||||||||  |||| |||||||| |||| |||| ||||||    
T  24196232 tgttaggagttccacatcgattagataaaagttatcgacgtggtgcttaagctatgaggctcccccacctaatggattagtattttgggttgg 24196140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 32955029 - 32954984
Alignment:
Q  170 agaaagaggagtgttatttgaacaaccattttgtaggacaacttgt 215  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  32955029 agaaagaggagtgttatttgaacaaccattttataggacaacttgt 32954984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 22576729 - 22576674
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatg 76  Q
    |||||||||||||||||||||||||||||| |||| || |||||| ||||||||||    
T  22576729 tgttaggagtcccacatcgagtagataaaaatgcttgatgtggtagttaagccatg 22576674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 21008540 - 21008439
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatctcc 120  Q
    ||||| ||||||||||||||||| ||||||||| | |  ||||||||||||  | ||||||  |||| |||||||||| ||||||| ||||||  |||||    
T  21008540 tgttaagagtcccacatcgagtacataaaagtgtttgttgtggtacttaagttacgaggctcccccacctaatggacttgtcttttgggttgggctctcc 21008441  T
Q  121 tc 122  Q
    ||    
T  21008440 tc 21008439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 21373519 - 21373434
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttt 106  Q
    |||||||| | | ||||||||||||||||||||||| || |||||||||| ||||| |||| | ||| |||||||| ||| |||||    
T  21373519 tgttaggatttctacatcgagtagataaaagtgctcaacatggtacttaatccatgcggctcttccacctaatggagtagcctttt 21373434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 34074291 - 34074376
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttt 106  Q
    |||||||| || |||||||||||||| ||| | || || ||| |||||||| ||||||||| ||||| ||| ||||||||||||||    
T  34074291 tgttaggattctcacatcgagtagatcaaaatacttgatgtgatacttaaggcatgaggctctcccacctattggactagtctttt 34074376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 34373717 - 34373632
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttt 106  Q
    |||||||| || |||||||||||||| |||||||| || || ||||||||| | ||||| | ||||| ||| ||||||||||||||    
T  34373717 tgttaggactctcacatcgagtagattaaagtgcttgatgtagtacttaagtcgtgaggttctcccacctattggactagtctttt 34373632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 34374013 - 34373928
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttt 106  Q
    ||||| ||||| || ||||||||||| |||||||| || |||||||||||||| ||||| | ||| |  || ||||||||||||||    
T  34374013 tgttatgagtctcatatcgagtagattaaagtgcttgatgtggtacttaagccgtgaggttctcctacatattggactagtctttt 34373928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 12284154 - 12284202
Alignment:
Q  172 aaagaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    ||||||||||||||||||||||||||||||    |||||||||||||||    
T  12284154 aaagaggagtgttatttgaacaaccatttttgttgacaacttgtgggac 12284202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 36885374 - 36885420
Alignment:
Q  173 aagaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    |||||||||||||||||||||||||||| || ||||||||| ||||||    
T  36885374 aagaggagtgttatttgaacaaccatttggt-ggacaacttatgggac 36885420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 26189740 - 26189674
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttccca 87  Q
    ||||| |||||| |||| ||||| |||||| ||||  | |||||||||||||||||||||| |||||    
T  26189740 tgttaagagtcctacattgagtaaataaaactgctaaatgtggtacttaagccatgaggctctccca 26189674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 12600 - 12701
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatctcc 120  Q
    |||||||||||||||||||||||||| |||||||| || ||| |||||||||||||||| | | ||| ||| |||||||||||||| ||||||  |||||    
T  12600 tgttaggagtcccacatcgagtagatcaaagtgcttgatgtgttacttaagccatgaggttcttccacctattggactagtcttttgggttgggctctcc 12699  T
Q  121 tc 122  Q
    ||    
T  12700 tc 12701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 262120 - 262221
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatctcc 120  Q
    ||||||||||||||||||||||| || |||||||| || |||||||||||||| ||||| | ||||| ||| ||||||||| |||| ||||||  |||||    
T  262120 tgttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcc 262219  T
Q  121 tc 122  Q
    ||    
T  262220 tc 262221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 30045446 - 30045547
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatctcc 120  Q
    ||||||||||||||||||||||| || |||||||| || |||||||||||||| ||||| | ||||| ||| ||||||||| |||| ||||||  |||||    
T  30045446 tgttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcc 30045545  T
Q  121 tc 122  Q
    ||    
T  30045546 tc 30045547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 4140075 - 4140173
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatctc 119  Q
    |||||| |||| ||||| || ||||||||||||||| |  |||||||||||||||||| || |||||  ||||| ||||||||||| ||||||| ||||    
T  4140075 tgttagaagtctcacattgaatagataaaagtgctcaatatggtacttaagccatgagactctcccacgtaatgaactagtcttttgggttggactctc 4140173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 28748293 - 28748251
Alignment:
Q  178 gagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  28748293 gagtgttatttgaacaaccattttgtaggacaacttgtgggac 28748251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 1702001 - 1701900
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatctcc 120  Q
    ||||||||||| |||||||||||||| ||| | || || ||||||||||||||| |||| | |||||  || |||||||||||||| ||||||  |||||    
T  1702001 tgttaggagtctcacatcgagtagatcaaaatacttgatgtggtacttaagccaagaggttctcccacttattggactagtcttttaggttggcctctcc 1701902  T
Q  121 tc 122  Q
    ||    
T  1701901 tc 1701900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 32729550 - 32729636
Alignment:
Q  20 ctgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttt 106  Q
    |||||||||||| |||||||||||||| ||| |||| || ||| |||||||| ||||| | | ||||| ||| ||||||||||||||    
T  32729550 ctgttaggagtctcacatcgagtagatcaaactgcttgatgtgatacttaagtcatgaagttctcccacctattggactagtctttt 32729636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 1702273 - 1702188
Alignment:
Q  28 agtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttgg 113  Q
    ||||||||||||||||||| ||| || | || |||||||||||||||||||| | ||| ||||| |||| | ||||||| ||||||    
T  1702273 agtcccacatcgagtagatcaaaatgtttgatgtggtacttaagccatgaggttctcctatctattggattggtcttttgggttgg 1702188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 200
Target Start/End: Original strand, 6531065 - 6531093
Alignment:
Q  172 aaagaggagtgttatttgaacaaccattt 200  Q
    |||||||||||||||||||||||||||||    
T  6531065 aaagaggagtgttatttgaacaaccattt 6531093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 8920264 - 8920217
Alignment:
Q  173 aagaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8920264 aagaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 8920217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 15173576 - 15173475
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatctcc 120  Q
    ||||| |||||||||| || |||| |||||||||| || ||||||||||| |||||||||| ||||| ||  |||||||||||||| ||||||  |||||    
T  15173576 tgttaagagtcccacaccgggtagctaaaagtgcttgatgtggtacttaacccatgaggctctcccaccttttggactagtcttttgggttgggctctcc 15173477  T
Q  121 tc 122  Q
    ||    
T  15173476 tc 15173475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 36975237 - 36975329
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttgg 113  Q
    |||||||||||||||||||||||||| |||||| | || || ||| ||||| ||| ||||| ||||||||| || ||||||||||| ||||||    
T  36975237 tgttaggagtcccacatcgagtagattaaagtgtttgatgtagtatttaagtcataaggctctcccatctattgaactagtcttttgggttgg 36975329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 22599182 - 22599091
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttg 112  Q
    ||||||||||||||||||| |||  |||||||| | ||  ||||||||||| ||||||||| || |||||| |||||||||||||| |||||    
T  22599182 tgttaggagtcccacatcgggtaactaaaagtgtttgatatggtacttaagtcatgaggctctctcatctattggactagtcttttaggttg 22599091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 16253754 - 16253852
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatctc 119  Q
    ||||||||||| |||||||||||||||||| ||||||  |||||||||| | || |||  | ||||| ||||||||||| |||||| ||||||| ||||    
T  16253754 tgttaggagtctcacatcgagtagataaaaatgctcggtgtggtacttaggtcacgagattctcccaactaatggactaatcttttgggttggactctc 16253852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 22587086 - 22586996
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggtt 111  Q
    ||||| |||||||||||||||||  |||||||| | || || ||||||||||||||||||| || || ||| |||||||||||||| ||||    
T  22587086 tgttacgagtcccacatcgagtaactaaaagtgtttgatgtagtacttaagccatgaggctctcacacctattggactagtcttttgggtt 22586996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 36975926 - 36976016
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggtt 111  Q
    |||||||||||||||||||||||||| |||||| | || |||||| ||||| ||| ||||| ||||| ||  |||||||||||||| ||||    
T  36975926 tgttaggagtcccacatcgagtagatcaaagtgtttgatgtggtatttaagtcataaggctctcccacctgttggactagtcttttgggtt 36976016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 10567339 - 10567440
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatctcc 120  Q
    ||||||||||||||||| ||||| || |||||||| || ||| |||||||| ||||||| | ||||| ||| || ||||||||||| ||||||  |||||    
T  10567339 tgttaggagtcccacattgagtatatcaaagtgcttgatgtgatacttaaggcatgaggttctcccacctattgcactagtcttttgggttgggctctcc 10567438  T
Q  121 tc 122  Q
    ||    
T  10567439 tc 10567440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 15226242 - 15226157
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttt 106  Q
    |||||| |||| | |||| ||||||||||||||| ||||||||||||||||| |||||||| | |||  |||||||||| ||||||    
T  15226242 tgttagaagtctctcatcaagtagataaaagtgcccgacgtggtacttaagctatgaggctctgccaattaatggactattctttt 15226157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 21922032 - 21922077
Alignment:
Q  175 gaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||    
T  21922032 gaggagtgttatttgaacaaccattttctaggacaatttgtgggac 21922077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 15884641 - 15884683
Alignment:
Q  178 gagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    ||||||||||||||||||||||||||| || ||||||||||||    
T  15884641 gagtgttatttgaacaaccattttgtaagataacttgtgggac 15884683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 10321693 - 10321608
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttt 106  Q
    ||||||||||||||||||   || ||||||||| | || |||||||||||||||||||||| ||  | ||| ||||||| ||||||    
T  10321693 tgttaggagtcccacatcagataaataaaagtgtttgatgtggtacttaagccatgaggctctcttacctattggactaatctttt 10321608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 35473505 - 35473469
Alignment:
Q  180 gtgttatttgaacaaccattttgtaggacaacttgtg 216  Q
    |||||||||||||||||||||| ||||||||||||||    
T  35473505 gtgttatttgaacaaccattttataggacaacttgtg 35473469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 29463180 - 29463134
Alignment:
Q  174 agaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    ||||||||||||||||||||||||||||    |||||||||||||||    
T  29463180 agaggagtgttatttgaacaaccatttttgttgacaacttgtgggac 29463134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 41173433 - 41173391
Alignment:
Q  178 gagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    ||||||||||||||||| |||||||||||| || |||||||||    
T  41173433 gagtgttatttgaacaatcattttgtaggataatttgtgggac 41173391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 10649621 - 10649593
Alignment:
Q  172 aaagaggagtgttatttgaacaaccattt 200  Q
    |||||||||||||||||||||||||||||    
T  10649621 aaagaggagtgttatttgaacaaccattt 10649593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 200
Target Start/End: Original strand, 10658989 - 10659017
Alignment:
Q  172 aaagaggagtgttatttgaacaaccattt 200  Q
    |||||||||||||||||||||||||||||    
T  10658989 aaagaggagtgttatttgaacaaccattt 10659017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 170
Target Start/End: Original strand, 42706829 - 42706857
Alignment:
Q  142 tattcataagcttgtcaaggtagtttata 170  Q
    |||||||||||||||||||||||||||||    
T  42706829 tattcataagcttgtcaaggtagtttata 42706857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 15002388 - 15002448
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggct 81  Q
    |||||||||| | | ||||||||| |||||||||||||||| |||||||||||||||||||    
T  15002388 tgttaggagttctatatcgagtagttaaaagtgctcgacgtagtacttaagccatgaggct 15002448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 3870889 - 3870788
Alignment:
Q  21 tgttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggttggaatctcc 120  Q
    ||||||||||| ||||||||||||||  || |||| || ||||||||||||| | |||||| ||||| |   |||||||||||||| ||||||  |||||    
T  3870889 tgttaggagtctcacatcgagtagatttaaatgcttgatgtggtacttaagctacgaggctctcccaccatttggactagtcttttgggttgggctctcc 3870790  T
Q  121 tc 122  Q
    ||    
T  3870789 tc 3870788  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 42962482 - 42962434
Alignment:
Q  172 aaagaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    |||||| ||||||||||||||||||||||| | ||||||||||||||||    
T  42962482 aaagagaagtgttatttgaacaaccattttatgggacaacttgtgggac 42962434  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 54260091 - 54260136
Alignment:
Q  175 gaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    ||||||||||||||||||||| ||||||||| |||| |||||||||    
T  54260091 gaggagtgttatttgaacaactattttgtagaacaatttgtgggac 54260136  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 15002154 - 15002229
Alignment:
Q  36 atcgagtagataaaagtgctcgacgtggtacttaagccatgaggctttcccatctaatggactagtctttttggtt 111  Q
    |||||||||||||||||| |||||||||| |||||| |||||| || |  || ||||  |||||||||||| ||||    
T  15002154 atcgagtagataaaagtgttcgacgtggtgcttaagtcatgagcctctttcacctaaatgactagtcttttgggtt 15002229  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 7400837 - 7400887
Alignment:
Q  23 ttaggagtcccacatcgagtagataaaagtgctcgacgtggtacttaagcc 73  Q
    ||||||||||||||||||||| || |||||| | || ||||||||||||||    
T  7400837 ttaggagtcccacatcgagtatatcaaagtgtttgatgtggtacttaagcc 7400887  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 13843724 - 13843678
Alignment:
Q  33 cacatcgagtagataaaagtgctcgacgtggtacttaagccatgagg 79  Q
    |||||||||||||| ||||||||  | ||||||||||||||||||||    
T  13843724 cacatcgagtagatcaaagtgcttaatgtggtacttaagccatgagg 13843678  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 30567846 - 30567883
Alignment:
Q  174 agaggagtgttatttgaacaaccattttgtaggacaac 211  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  30567846 agaggagtgttatttgaacaaccattttatagaacaac 30567883  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 31445994 - 31446043
Alignment:
Q  171 gaaagaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    ||||||||| ||||||||||||||||||||| |  ||||||||| |||||    
T  31445994 gaaagaggaatgttatttgaacaaccattttatgagacaacttgagggac 31446043  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 36412307 - 36412262
Alignment:
Q  175 gaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    |||||||||||||||||||||||||| ||  |||||||| ||||||    
T  36412307 gaggagtgttatttgaacaaccatttggtttgacaacttatgggac 36412262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 28716191 - 28716235
Alignment:
Q  175 gaggagtgttatttgaacaaccattttgtaggacaacttgtggga 219  Q
    ||||| |||||||||||||||||||||   |||||||||||||||    
T  28716191 gaggaatgttatttgaacaaccattttaggggacaacttgtggga 28716235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 200
Target Start/End: Original strand, 51465799 - 51465827
Alignment:
Q  172 aaagaggagtgttatttgaacaaccattt 200  Q
    |||||||||||||||||||||||||||||    
T  51465799 aaagaggagtgttatttgaacaaccattt 51465827  T

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Target: scaffold0034 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 22762 - 22717
Alignment:
Q  175 gaggagtgttatttgaacaaccattttgtaggacaacttgtgggac 220  Q
    |||||| |||||||||||||||||||| | ||||||||||||||||    
T  22762 gaggagcgttatttgaacaaccattttatgggacaacttgtgggac 22717  T

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Target: scaffold0136 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 38611 - 38583
Alignment:
Q  172 aaagaggagtgttatttgaacaaccattt 200  Q
    |||||||||||||||||||||||||||||    
T  38611 aaagaggagtgttatttgaacaaccattt 38583  T

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Target: scaffold0100 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 44946 - 44910
Alignment:
Q  175 gaggagtgttatttgaacaaccattttgtaggacaac 211  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  44946 gaggagtgttatttaaacaatcattttgtaggacaac 44910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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