View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17145_low_5 (Length: 656)
Name: NF17145_low_5
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17145_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 16 - 644
Target Start/End: Original strand, 26076581 - 26077211
Alignment:
| Q |
16 |
tcattgagtcacttgacttgaaagcttaaattattaagccgagacaaagtatagctttttagaattaaaactccatcacagccttcaaattacaccggac |
115 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26076581 |
tcattgagtcacttaacttgaaagcttaaattattaagccgagacaaagtatagctttttagaattaaaactccatcacacccttcaaattacaccggac |
26076680 |
T |
|
| Q |
116 |
tgctaatattgactccgtgtagtactacagtttcctcgtgcttaactttaaatttataaataagatcagacctgggaaaaatttaagtctaaacagttaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
26076681 |
tgctaatattgactccgtgtagtactacagtttcctcgtgcttaactttaaatttataaataagatcggacctgggaaaattttaagtctaaacagttaa |
26076780 |
T |
|
| Q |
216 |
aaaagctttgatattagggaaagaccctaagaatgtacttcggagtttggaggttaataaaagtttcaatatttctgcatgataatgagacggtggaaac |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
26076781 |
aaaagctttgatattagggaaagaccctaagaatgtacttaggagtttggaggttaataaaattttcaatatttctgcatgataatgagacggtggaaac |
26076880 |
T |
|
| Q |
316 |
ttgattctgttctgaaatgttagttgtatgattgaaatcacaatgttgcactagcctgtcatgtttgcttaggtaatctttattcattcatttctttgca |
415 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26076881 |
ttgattttgttctgaaatgttagttgtatgattgaaatcacaatgttgcactagcctgtcatgtttgcttaggtaatctttattcattcatttctttgca |
26076980 |
T |
|
| Q |
416 |
ggctgccgatttctttcgagctgacaatccagaaggcatggaggcacgtaatgaggtagtttagtcgtgatcttttttgtcgttattactagtattattt |
515 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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|
| T |
26076981 |
ggctgctgatttctttcgagctgacaatccagaaggcatggaggcacgtaatgaggtagtttagtcttgatcttttttgtcattattactagtattattt |
26077080 |
T |
|
| Q |
516 |
aatttgattagattaatcgagtctttcagtctc--aannnnnnnnagcttgcatattaggctatacatagaattctgatggtggtgcttgtataagctgt |
613 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
26077081 |
aatttgattagattaatcgagtctttcagtctctaatttttttttagcttgcatattaggctatacataaaattctgatggtggtgcttgtataagctgt |
26077180 |
T |
|
| Q |
614 |
tgaatcttattgcattcgatggactatttca |
644 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
26077181 |
tgaatcttattgcattcgatggactatttca |
26077211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 16 - 639
Target Start/End: Complemental strand, 27627996 - 27627371
Alignment:
| Q |
16 |
tcattgagtcacttgacttgaaagcttaaattattaagccgagacaaagtatagctttttagaattaaaactccatcacagccttcaaattacaccggac |
115 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||| |
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|
| T |
27627996 |
tcattgagtcacttgacttggaagcttaaattattaagccgagacaaaatatagctttttagaattaaaacaccatcacacccttcaaattacaccggat |
27627897 |
T |
|
| Q |
116 |
tgctaatattgactccgtgtagtactacagtttcctcgtgcttaactttaaatttataaataagatcagacctgggaaaaatttaagtctaaacagttaa |
215 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
27627896 |
cgctaatatagactctgtgtagtactacagtttcctcgtgcttaactttaaatttataaataagatcggacctgggaaaaatttaagtctaaacagttaa |
27627797 |
T |
|
| Q |
216 |
aaaagctttgatattagggaaagaccctaagaatgtacttcggagtttggaggttaataaaagtttcaatatttctgcatgataatgagacggtggaaac |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||| |||||| |
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|
| T |
27627796 |
gaaagctttgatattagggaaagaccctaagaatgtacttcggagtttggagggtaataaaagtttcaatatttccgcacgataatgagacgggggaaac |
27627697 |
T |
|
| Q |
316 |
ttgattctgttctgaaatgttagttgtatgattgaaatcacaatgttgcactagcctgtcatgtttgcttaggtaatctttattca-ttcatttctttgc |
414 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
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|
| T |
27627696 |
ttgattctgtcctgaaatgttagttgtatgattgaaatcacaatgttgcactagcctgtcatgtttgcttaggtaatctttattcatttcatttcttcgc |
27627597 |
T |
|
| Q |
415 |
aggctgccgatttctttcgagctgacaatccagaaggcatggaggcacgtaatgaggtagtttagtcgtgatcttttttgtcgttattactagtattatt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||| |||||||||| |
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|
| T |
27627596 |
aggctgccgatttctttcgagctgacaatccagaaggcatggaggcacgtaatgaggtagtttattcttgatcttttttgttgttattattagtattatt |
27627497 |
T |
|
| Q |
515 |
taatttgattagattaatcgagtctttcagtctc-aannnnnnnnagcttgcatattaggctatacatagaattctgatggtggtgcttgtataagctgt |
613 |
Q |
| |
|
||||||||||||||||| ||||||||| || ||| || ||||||||||| ||||||||| ||||||||||| || ||||||||||| || ||| |
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|
| T |
27627496 |
taatttgattagattaaccgagtctttgagactctaaatttttttagcttgcatatcaggctatacctagaattctgacggcggtgcttgtattagttgt |
27627397 |
T |
|
| Q |
614 |
tgaatcttattgcattcgatggacta |
639 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
27627396 |
tgaatcttattgcattcgatggacta |
27627371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 418 - 473
Target Start/End: Original strand, 30592711 - 30592766
Alignment:
| Q |
418 |
ctgccgatttctttcgagctgacaatccagaaggcatggaggcacgtaatgaggta |
473 |
Q |
| |
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|||| ||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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|
| T |
30592711 |
ctgctgatttctttcgagctgacaatcctgaaggcatagaggcacgtaatgaggta |
30592766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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