View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17145_low_8 (Length: 614)

Name: NF17145_low_8
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17145_low_8
NF17145_low_8
[»] chr8 (16 HSPs)
chr8 (16-599)||(29552318-29552901)
chr8 (16-183)||(30648831-30648998)
chr8 (23-106)||(15329875-15329958)
chr8 (23-106)||(15510244-15510327)
chr8 (25-106)||(14727780-14727861)
chr8 (16-186)||(26089170-26089343)
chr8 (23-106)||(28865969-28866052)
chr8 (29-124)||(24509329-24509424)
chr8 (25-172)||(27714299-27714446)
chr8 (332-474)||(14727403-14727542)
chr8 (16-103)||(28693137-28693225)
chr8 (33-104)||(26090247-26090318)
chr8 (328-395)||(15329583-15329650)
chr8 (328-395)||(15509952-15510019)
chr8 (75-130)||(31039544-31039599)
chr8 (328-410)||(30648601-30648683)
[»] chr7 (3 HSPs)
chr7 (25-475)||(17292616-17293066)
chr7 (328-410)||(6611154-6611236)
chr7 (27-185)||(6610865-6611026)
[»] chr3 (1 HSPs)
chr3 (26-183)||(4819856-4820013)
[»] chr1 (1 HSPs)
chr1 (28-178)||(26086400-26086550)


Alignment Details
Target: chr8 (Bit Score: 536; Significance: 0; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 16 - 599
Target Start/End: Complemental strand, 29552901 - 29552318
Alignment:
Q  16 catttcctagggtagaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggacttagtactga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29552901 catttcctagggtagaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggacttagtactga 29552802  T
Q  116 ttgataggtggcagtcacaacaagggctgcaactatcaacatagtgttacgttgctcatctgttatatttcgtgatatgcgatgcatataaattgacagt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  29552801 ttgataggtggcagtcacaacaagggctgcaactatcaacatagtgttacgttgctcatcttttatatttcgtgatatgcgaagcatataaattgacagt 29552702  T
Q  216 ttatcaataatggtggtctctgaacttagtttatatgcaggtgtgtgagcatcgatgacttgggtgccagattttgctccggcactgcataatattttct 315  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29552701 ttatcaataatagtggtctctgaacttagtttatatgcaggtgtgtgagcatcgatgacttcggtgccagattttgctccggcactgcataatattttct 29552602  T
Q  316 tgctctccgtagttgctatgtctaatgctgttttgtcctcaaagttctttgtcttcaaatttattttagtatttaccaacaatcgaactgcctgtcatac 415  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29552601 tgctctccgtagttgctacgtctaatgctgttttgtcctcaaagttctttgtcttcaaatttattttagtatttaccaacaatcgaactgcctgtcatac 29552502  T
Q  416 cgattaataatcaatgaacaatacaattgttagagatcattcatgttagctactaaaatactcagaagaatgattacctcatgttgatcacttgttgaag 515  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  29552501 cgattaataatcaatgaacaatgcaattgttagagatcattcatgttagctgctaaaatactaagaagaatgattacctcatgttgatcacttgttgaag 29552402  T
Q  516 ctgaaatgtgcaaaatagtgttgcctgccaaatccttctggttcagtattctattttccagatctatagcacctgtcctgtaat 599  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| |||||||||    
T  29552401 ctgaaatgtgcaaaatagtgttgcctgccacatccttctggttcagtattttattttccatatctatagcacctatcctgtaat 29552318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 30648998 - 30648831
Alignment:
Q  16 catttcctagggtagaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggacttagtactga 115  Q
    |||||||| ||| |||||| ||| ||||||||||||||||||||   ||  |||||| |||| |||||||||||| ||||||||||||||| | | ||||    
T  30648998 catttcctggggcagaaatggtaaaattggaggaagtgatgttcgtgttagtgtcaccagcactaacctgataaattccaccagggggactcaatcctga 30648899  T
Q  116 ttgataggtggcagtcacaacaagggctgcaactatcaacatagtgttacgttgctcatctgttatat 183  Q
    ||||||| |||||||| ||||||| |  ||||||||||||  ||||||||||||||| |||| |||||    
T  30648898 ttgatagatggcagtcgcaacaagagtcgcaactatcaaccaagtgttacgttgctcctctgatatat 30648831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 15329958 - 15329875
Alignment:
Q  23 tagggtagaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggact 106  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||  |||| ||| ||||||||||||||||||||||||    
T  15329958 tagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaactccaccagggggact 15329875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 15510327 - 15510244
Alignment:
Q  23 tagggtagaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggact 106  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||  |||| ||| ||||||||||||||||||||||||    
T  15510327 tagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaactccaccagggggact 15510244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 14727861 - 14727780
Alignment:
Q  25 gggtagaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggact 106  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||    
T  14727861 gggtggaaatagtagaattggaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccaccagggggact 14727780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 26089343 - 26089170
Alignment:
Q  16 catttcctagggtagaaatagtagaattggaggaagtgatgttcaaatttttg---tcactagcattaacctgataaactccaccagggggacttagtac 112  Q
    |||||||| | |||||||||||||||||||||||||||||||||| |   |||   ||||||||| |||||||||||| ||||| ||||||||| | | |    
T  26089343 catttcctggagtagaaatagtagaattggaggaagtgatgttcacaccattgccatcactagcactaacctgataaattccactagggggactcaatcc 26089244  T
Q  113 tgattgataggtggcagtcacaacaagggctgcaactatcaacatagtgttacgttgctcatctgttatatttc 186  Q
    |||||||||  | |||||  ||||||| |  ||||||||||||  | ||||||||||||| || ||||||||||    
T  26089243 tgattgataaatcgcagttgcaacaagagtcgcaactatcaaccaactgttacgttgctcctcggttatatttc 26089170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 28866052 - 28865969
Alignment:
Q  23 tagggtagaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggact 106  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||  || | ||| |||||||| |||||||||||||||    
T  28866052 tagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagaactaatctgataaaatccaccagggggact 28865969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 24509424 - 24509329
Alignment:
Q  29 agaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggacttagtactgattgataggt 124  Q
    |||||||||||||| |||||||||| |||||||||||||||   ||||||||   ||||||| ||| ||||||||| ||||||||| |||||||||    
T  24509424 agaaatagtagaatcggaggaagtggtgttcaaatttttgttggtagcattagtttgataaaatccgccagggggatttagtactgtttgataggt 24509329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 27714446 - 27714299
Alignment:
Q  25 gggtagaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggacttagtactgattgataggt 124  Q
    ||||||| || |||||||| |||||||| ||||| | ||| |||||||||||||||||||||||||||||||||  |||| | | | ||||||||||  |    
T  27714446 gggtagacattgtagaattagaggaagtaatgttgacattattgtcactagcattaacctgataaactccaccaacgggagtcaatgctgattgatacat 27714347  T
Q  125 ggcagtcacaacaagggctgcaactatcaacatagtgttacgttgctc 172  Q
    ||| ||  ||||||| |  |||||||||| |  |||||| ||||||||    
T  27714346 ggctgttgcaacaagagtcgcaactatcatccaagtgttgcgttgctc 27714299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 474
Target Start/End: Complemental strand, 14727542 - 14727403
Alignment:
Q  332 tatgtctaatgctgttttgtcctcaaagttctttgtcttcaaatttattttagtatttaccaacaatcgaactgcctgtcataccgattaataatcaatg 431  Q
    |||||||||||||||||||| ||| || ||||||  ||||||||||||   |||| ||||||||||| ||| |||||||  ||||    | |||| ||||    
T  14727542 tatgtctaatgctgttttgttctccaaattcttttccttcaaatttataccagtacttaccaacaattgaagtgcctgtgctacc---aagtaattaatg 14727446  T
Q  432 aacaatacaattgttagagatcattcatgttagctactaaaat 474  Q
    |||| |||| |||||||| ||||||||||| ||| ||||||||    
T  14727445 aacagtacatttgttagaaatcattcatgtaagcaactaaaat 14727403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 28693137 - 28693225
Alignment:
Q  16 catttcctagggtagaaatagtagaattggaggaagtgatgttcaaatttttgtcactagca-ttaacctgataaactccaccaggggg 103  Q
    ||||| || |||||||||||||||| || ||||||||||||||||||||  |||||| |||| | || |||||||| ||||||||||||    
T  28693137 catttgctggggtagaaatagtagagtttgaggaagtgatgttcaaattactgtcaccagcactaaatctgataaattccaccaggggg 28693225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 26090318 - 26090247
Alignment:
Q  33 atagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccaggggga 104  Q
    |||||||||||| |||||||||||||| |||| ||||||| | |  ||| |||||||||||||||| |||||    
T  26090318 atagtagaattgaaggaagtgatgttccaattattgtcaccaaccctaatctgataaactccaccatgggga 26090247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 395
Target Start/End: Complemental strand, 15329650 - 15329583
Alignment:
Q  328 ttgctatgtctaatgctgttttgtcctcaaagttctttgtcttcaaatttattttagtatttaccaac 395  Q
    |||||||||| ||||||||||| | ||| || |||||| | | ||||||||||||||| |||||||||    
T  15329650 ttgctatgtccaatgctgttttattctccaaattctttttgtgcaaatttattttagtctttaccaac 15329583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 395
Target Start/End: Complemental strand, 15510019 - 15509952
Alignment:
Q  328 ttgctatgtctaatgctgttttgtcctcaaagttctttgtcttcaaatttattttagtatttaccaac 395  Q
    |||||||||| ||||||||||| | ||| || |||||| | | ||||||||||||||| |||||||||    
T  15510019 ttgctatgtccaatgctgttttattctccaaattctttttgtgcaaatttattttagtctttaccaac 15509952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 31039544 - 31039599
Alignment:
Q  75 gcattaacctgataaactccaccagggggacttagtactgattgataggtggcagt 130  Q
    |||||| | ||||||||||||||||||||||| ||| |||||||||| || |||||    
T  31039544 gcattaccttgataaactccaccagggggactaagtgctgattgatacgtcgcagt 31039599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 328 - 410
Target Start/End: Complemental strand, 30648683 - 30648601
Alignment:
Q  328 ttgctatgtctaatgctgttttgtcctcaaagttctttgtcttcaaatttattttagtatttaccaacaatcgaactgcctgt 410  Q
    |||||||||||||||| ||||||| ||||   ||||||| |||||||| |||   |||| ||||||||||| ||| |||||||    
T  30648683 ttgctatgtctaatgcggttttgttctcactattctttgccttcaaatctataccagtacttaccaacaatagaagtgcctgt 30648601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 5e-36; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 25 - 475
Target Start/End: Original strand, 17292616 - 17293066
Alignment:
Q  25 gggtagaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggacttagtactgattgataggt 124  Q
    |||||||||| ||||||||| |||||||| |||||| ||| |||||||||| | ||||||||||||| ||||||  |||| ||||   ||||||||||||    
T  17292616 gggtagaaattgtagaattgaaggaagtgttgttcacattattgtcactagtactaacctgataaacaccaccaacgggagttagcgttgattgataggt 17292715  T
Q  125 ggcagtcacaacaagggctgcaactatcaacatagtgttacgttgctcatctgttatatttcgtgatatgcgatgcatataaattgacagtttatcaata 224  Q
    ||| ||  ||||||| |  |||| |||||||  |||||| |||||||  || | |||||||| |   |||||| | || |||||  ||| |||||| | |    
T  17292716 ggctgttgcaacaagagtcgcaattatcaaccaagtgttgcgttgcttctccgatatatttctttcaatgcgacgtatgtaaatcaacattttatccaca 17292815  T
Q  225 atggtggtctctgaacttagtttatatgcaggtgtgtgagcatcgatgacttgggtgccagattttgctccggcactgcataatattttcttgctctc-- 322  Q
    || ||||||| ||| |||||||||| |||| ||||| ||||||| |||||||    || || ||||| ||| |||||  |||| ||  ||||| ||||      
T  17292816 atagtggtctttgatcttagtttatgtgcaagtgtgggagcatccatgacttctaagctaggttttgatccagcactaaataagatactcttgttctcta 17292915  T
Q  323 -cgtagttgctatgtctaatgctgttttgtcctcaaagttctttgtcttcaaatttattttagtatttaccaacaatcgaactgcctgtcataccgatta 421  Q
      || |  || ||||||||||||||||||| ||| || ||||| | ||||||||||||   |||| |||||||||||||||  ||||||  |||    ||    
T  17292916 gagtggcggcaatgtctaatgctgttttgttctccaaattcttcgccttcaaatttatcccagtacttaccaacaatcgaagcgcctgtgctac---ata 17293012  T
Q  422 ataatcaatgaacaatacaattgttagagatcattcatgttagctactaaaata 475  Q
     ||||  |||||| |||||||||||| ||||||||||| ||||| |||||||||    
T  17293013 gtaattcatgaacgatacaattgttaaagatcattcatattagcaactaaaata 17293066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 328 - 410
Target Start/End: Original strand, 6611154 - 6611236
Alignment:
Q  328 ttgctatgtctaatgctgttttgtcctcaaagttctttgtcttcaaatttattttagtatttaccaacaatcgaactgcctgt 410  Q
    |||||||||||||||||||||||  ||| |||||| |||| ||||||||||||||||| ||||||||||||||||||||||||    
T  6611154 ttgctatgtctaatgctgttttgctctccaagttcattgtgttcaaatttattttagtctttaccaacaatcgaactgcctgt 6611236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 185
Target Start/End: Original strand, 6610865 - 6611026
Alignment:
Q  27 gtagaaatagtagaattggaggaagtgatgttcaaatttttgtca---ctagcattaacctgataaactccaccagggggacttagtactgattgatagg 123  Q
    ||||||||||||||||| |||||||||||||||| |   ||||||   | | || |||||||||||| ||||||||| ||||| | | |||||||||||     
T  6610865 gtagaaatagtagaatttgaggaagtgatgttcacaccattgtcatcaccaacactaacctgataaattccaccaggaggactcaatcctgattgataga 6610964  T
Q  124 tggcagtcacaacaagggctgcaactatcaacatagtgttacgttgctcatctgttatattt 185  Q
    |||||||  |||| || |  |||| |||||||  ||||||||| | ||| ||||| ||||||    
T  6610965 tggcagttgcaacgagagtcgcaattatcaaccaagtgttacggttctcctctgtcatattt 6611026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 26 - 183
Target Start/End: Complemental strand, 4820013 - 4819856
Alignment:
Q  26 ggtagaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggacttagtactgattgataggtg 125  Q
    |||||||||||||||||||| ||| |||||||||||| |  ||||||||||||||||||||||||||||||| || |||   | | |||||||| |||||    
T  4820013 ggtagaaatagtagaattggtggacgtgatgttcaaactactgtcactagcattaacctgataaactccacctggtggagacattgctgattgaaaggtg 4819914  T
Q  126 gcagtcacaacaagggctgcaactatcaacatagtgttacgttgctcatctgttatat 183  Q
    |||||  ||||||| |  ||||||||||||  |||||| |||||||| |||| |||||    
T  4819913 gcagttgcaacaagagtcgcaactatcaaccaagtgttgcgttgctcctctgatatat 4819856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 28 - 178
Target Start/End: Original strand, 26086400 - 26086550
Alignment:
Q  28 tagaaatagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggacttagtactgattgataggtggc 127  Q
    ||||||||||||||||||||||||||||||||||| | |||||||  ||| ||  | |||||||||||||||||||| | ||  |||||| |||  |||     
T  26086400 tagaaatagtagaattggaggaagtgatgttcaaactattgtcaccggcactactcggataaactccaccagggggagtcagagctgattcatacatggt 26086499  T
Q  128 agtcacaacaagggctgcaactatcaacatagtgttacgttgctcatctgt 178  Q
    |||| ||| ||| ||||| ||||| |||  | |||| |||||||| |||||    
T  26086500 agtcgcaataagagctgcgactattaaccaaatgttgcgttgctcctctgt 26086550  T

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