View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17145_low_9 (Length: 537)

Name: NF17145_low_9
Description: NF17145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17145_low_9
NF17145_low_9
[»] chr6 (5 HSPs)
chr6 (17-267)||(30241280-30241530)
chr6 (456-523)||(30247134-30247201)
chr6 (301-378)||(30241529-30241616)
chr6 (160-212)||(14169233-14169285)
chr6 (168-211)||(6080128-6080171)
[»] chr7 (1 HSPs)
chr7 (160-211)||(45878384-45878435)
[»] chr3 (4 HSPs)
chr3 (168-211)||(51450264-51450307)
chr3 (160-211)||(10042324-10042375)
chr3 (168-211)||(52136869-52136912)
chr3 (170-211)||(9256813-9256854)
[»] chr8 (2 HSPs)
chr8 (168-211)||(10774242-10774285)
chr8 (160-214)||(28281526-28281580)
[»] chr5 (1 HSPs)
chr5 (168-211)||(2078035-2078078)
[»] chr2 (2 HSPs)
chr2 (168-211)||(8178472-8178515)
chr2 (168-211)||(16291296-16291339)
[»] scaffold0073 (1 HSPs)
scaffold0073 (160-213)||(28053-28106)
[»] chr1 (1 HSPs)
chr1 (160-204)||(52834895-52834939)


Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 30241280 - 30241530
Alignment:
Q  17 agaaaaaagatacatcgttcagaattcaagtcttggtacattaaaaaagtgagatcgagaaatggagtaggcactctcggtgataaagagcgtaagaatg 116  Q
    ||||||||| || || |||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| || |||  |||||||||||||||||||    
T  30241280 agaaaaaagttatattgttcaggatttaagtcttggtacattgaaaaagtgagatcgagaaatggagtaggcgctatcgtggataaagagcgtaagaatg 30241379  T
Q  117 acatccttaatgtaaagaagaaagaaggttgaatcatatcacgaaaatttatagtggaacaagacacatttaatgttattagtgcttatgcaccttagaa 216  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30241380 acatccttaatgtaaagaagaaagaaggttgaatcatatcccaaaaatttatagtggaacaagacacatttaatgttattagtgcttatgcaccttagaa 30241479  T
Q  217 caccttaaagtaaatttataagaggttttagaaagcttaattcatgatata 267  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  30241480 caccttaaagtaaatctatgagaggttttagaaagcttaattcatgatata 30241530  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 456 - 523
Target Start/End: Original strand, 30247134 - 30247201
Alignment:
Q  456 aatttgatacaatctcttgatttttaaaattaaagtaagtgtttcatatcactgaatttttaagctat 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30247134 aatttgatacaatctcttgatttttaaaattaaagtaagtgtttcatatcactgaatttttaggctat 30247201  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 378
Target Start/End: Original strand, 30241529 - 30241616
Alignment:
Q  301 taaatgagcatgtagaaagtgctttgagtggtttt----------ataaaggggtatggcttctggcacataaatacatatggaaaat 378  Q
    |||||||||||||||||||||||||||||||||||          |||| |||||||||||||||| |||||||||||||||||||||    
T  30241529 taaatgagcatgtagaaagtgctttgagtggttttgagagcttttataagggggtatggcttctgggacataaatacatatggaaaat 30241616  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 14169285 - 14169233
Alignment:
Q  160 aaaatttatagtggaacaagacacatttaatgttattagtgcttatgcacctt 212  Q
    |||||||||||| |||||| |||  |||||||||||||||||| |||||||||    
T  14169285 aaaatttatagtagaacaatacatctttaatgttattagtgctcatgcacctt 14169233  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 6080128 - 6080171
Alignment:
Q  168 tagtggaacaagacacatttaatgttattagtgcttatgcacct 211  Q
    |||||||||||||||| |||||||| ||||| ||||||||||||    
T  6080128 tagtggaacaagacacctttaatgtaattagcgcttatgcacct 6080171  T

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Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 45878435 - 45878384
Alignment:
Q  160 aaaatttatagtggaacaagacacatttaatgttattagtgcttatgcacct 211  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  45878435 aaaatttgtagtggaacaagacacttttaatgttattagtgcttatgcacct 45878384  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 51450307 - 51450264
Alignment:
Q  168 tagtggaacaagacacatttaatgttattagtgcttatgcacct 211  Q
    |||||||||||||||| |||||||| ||||||||||||||||||    
T  51450307 tagtggaacaagacacctttaatgtaattagtgcttatgcacct 51450264  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 10042375 - 10042324
Alignment:
Q  160 aaaatttatagtggaacaagacacatttaatgttattagtgcttatgcacct 211  Q
    ||||||||||||||||||| ||   |||||||||| ||||||||||||||||    
T  10042375 aaaatttatagtggaacaatacctctttaatgttaatagtgcttatgcacct 10042324  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 52136869 - 52136912
Alignment:
Q  168 tagtggaacaagacacatttaatgttattagtgcttatgcacct 211  Q
    |||||||||||||||| |||||||| ||||| ||||||||||||    
T  52136869 tagtggaacaagacacctttaatgtaattagcgcttatgcacct 52136912  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 9256813 - 9256854
Alignment:
Q  170 gtggaacaagacacatttaatgttattagtgcttatgcacct 211  Q
    |||||||||||||| |||||||| ||||| ||||||||||||    
T  9256813 gtggaacaagacacctttaatgtaattagcgcttatgcacct 9256854  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 10774285 - 10774242
Alignment:
Q  168 tagtggaacaagacacatttaatgttattagtgcttatgcacct 211  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||    
T  10774285 tagtggaacaagacacatttaatgttattggtgtttacgcacct 10774242  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 28281526 - 28281580
Alignment:
Q  160 aaaatttatagtggaacaagacacatttaatgttattagtgcttatgcaccttag 214  Q
    ||||||| || |||||||||| ||||||||||| |||||| |||| |||||||||    
T  28281526 aaaatttgtaatggaacaagatacatttaatgtcattagttcttacgcaccttag 28281580  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 2078078 - 2078035
Alignment:
Q  168 tagtggaacaagacacatttaatgttattagtgcttatgcacct 211  Q
    |||||||||||||||| |||||||| ||||| ||||||||||||    
T  2078078 tagtggaacaagacacctttaatgtaattagcgcttatgcacct 2078035  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 8178472 - 8178515
Alignment:
Q  168 tagtggaacaagacacatttaatgttattagtgcttatgcacct 211  Q
    |||||||||||||||| |||||||| ||||| ||||||||||||    
T  8178472 tagtggaacaagacacctttaatgtaattagcgcttatgcacct 8178515  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 16291296 - 16291339
Alignment:
Q  168 tagtggaacaagacacatttaatgttattagtgcttatgcacct 211  Q
    |||||||||||||||| |||||||| ||||| ||||||||||||    
T  16291296 tagtggaacaagacacctttaatgtaattagcgcttatgcacct 16291339  T

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Target: scaffold0073 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 28106 - 28053
Alignment:
Q  160 aaaatttatagtggaacaagacacatttaatgttattagtgcttatgcacctta 213  Q
    ||||||| ||||||||||| ||| ||||||||||||||||| |||  |||||||    
T  28106 aaaatttgtagtggaacaatacatatttaatgttattagtgattacacacctta 28053  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 52834895 - 52834939
Alignment:
Q  160 aaaatttatagtggaacaagacacatttaatgttattagtgctta 204  Q
    |||||||||||||||| ||||||| ||||||||| ||| ||||||    
T  52834895 aaaatttatagtggaataagacacctttaatgttgttactgctta 52834939  T

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