View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17146_high_13 (Length: 355)
Name: NF17146_high_13
Description: NF17146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17146_high_13 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 27 - 355
Target Start/End: Complemental strand, 7161666 - 7161338
Alignment:
| Q |
27 |
gcatcatcatcttcctcctccatcactcctggagattcacttcaccaacagcctcttcccagtcttacgtttgacatcgtggctgaaattctttccaggc |
126 |
Q |
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| T |
7161666 |
gcatcatcatcttcctcctccatcactcctggagattcacttcaccaacagcctcttcccagtcttacgtttgacatcgtggctgaaattctttccaggc |
7161567 |
T |
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| Q |
127 |
ttccagtcaaatccctcatgcaactcaaatctgtctgcaaatcctggaaatctcttatttcagattcaaatttcgccaagaaccactttcgcgtttcaac |
226 |
Q |
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| T |
7161566 |
ttccagtcaaatccctcatgcaactcaaatcggtctgcaaatcctggaaatatcttatttcagattcaaatttcgccaagaaccactttcgcgtttcaac |
7161467 |
T |
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| Q |
227 |
cacgcgccaccatcttgtctcagataaaaccaaaccctcactcaagtattaccctctctcctccgttttcacagaaatcacccctaccaccactcccttg |
326 |
Q |
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| T |
7161466 |
cacgcgccaccatcttgtctcagataaaaccaaaccctcactcaattattaccctctctcctccgttttcacagaaatcacccctaccaccactcccttg |
7161367 |
T |
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| Q |
327 |
cagctacagttccctctaaacaatcaaag |
355 |
Q |
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| T |
7161366 |
cagctacagttccctctaaacgatcaaag |
7161338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 105 - 242
Target Start/End: Complemental strand, 7169530 - 7169393
Alignment:
| Q |
105 |
gtggctgaaattctttccaggcttccagtcaaatccctcatgcaactcaaatctgtctgcaaatcctggaaatctcttatttcagattcaaatttcgcca |
204 |
Q |
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| T |
7169530 |
gtggcggaaattctctccaggcttccagtcaagtttctcatgcaactccaatccgtctgtaagtcctggaaatctcttatctccgattcaaaattcgcta |
7169431 |
T |
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| Q |
205 |
agaaccactttcgcgtttcaaccacgcgccaccatctt |
242 |
Q |
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| T |
7169430 |
agaatcaccttcgcttgtcaaccacgctccaccgtctt |
7169393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 230
Target Start/End: Complemental strand, 7175163 - 7175055
Alignment:
| Q |
122 |
caggcttccagtcaaatccctcatgcaactcaaatctgtctgcaaatcctggaaatctcttatttcagattcaaatttcgccaagaaccactttcgcgtt |
221 |
Q |
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| T |
7175163 |
caggcttccagtcaaatccctcgcacagtttaaatctgtctccaaatcctggaaatctctcatctcagattcaaatttcaccaagaagaaccttcgcgtg |
7175064 |
T |
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| Q |
222 |
tcaaccacg |
230 |
Q |
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| T |
7175063 |
tcaaccacg |
7175055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 246
Target Start/End: Original strand, 11236913 - 11237045
Alignment:
| Q |
114 |
attctttccaggcttccagtcaaatccctcatgcaactcaaatctgtctgcaaatcctggaaatctcttatttcagattcaaatttcgccaagaaccact |
213 |
Q |
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||||| |||||||| |||||||||| ||||||||||||| |||| ||||| || |||||||||||||| || || ||| | || ||| ||| || ||| |
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| T |
11236913 |
attctctccaggctgccagtcaaatacctcatgcaactccaatccgtctgtaagtcctggaaatctctcatctccgatcccaaattcatcaaaaaacacc |
11237012 |
T |
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| Q |
214 |
ttcgcgtttcaaccacgcgccaccatcttgtct |
246 |
Q |
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| T |
11237013 |
ttcacgtgtccaccacgcgcctccatctcgtct |
11237045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 24722586 - 24722641
Alignment:
| Q |
123 |
aggcttccagtcaaatccctcatgcaactcaaatctgtctgcaaatcctggaaatc |
178 |
Q |
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| T |
24722586 |
aggcttccggtcaagtccctcatgcaattcaaatgtgtctgcaagtcctggaaatc |
24722641 |
T |
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