View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17146_high_15 (Length: 348)
Name: NF17146_high_15
Description: NF17146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17146_high_15 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 29 - 346
Target Start/End: Original strand, 27513835 - 27514150
Alignment:
| Q |
29 |
tcaaaacaacaacagccattcagtgagagagagtgaacctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagcacgtt |
128 |
Q |
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| T |
27513835 |
tcaaaacaacaacagccattcagtgagagagag--aacctcttcaccgagctcgatagctctttcaatagtagcatcgtgagctttcgacttagcatgtt |
27513932 |
T |
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| Q |
129 |
tctaaaacttcttttgaagagtttagcatgaatttcagatcgtttttctttgttcttactcatcgaaggacagagcagttccttcatttcggtttccgtc |
228 |
Q |
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| T |
27513933 |
tctaaaacttcttctgacgagtttagcatgaatttcagatcgtttttctttgttcttactcatcggaggacggagcggttccttcattctggtcttcgtc |
27514032 |
T |
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| Q |
229 |
tttgttctggttttttctgcggttcctcttcccaccgaaagccaattaaaaggtttgggaaggtttcacaatttgaacagacggaatttgaaaaatcaga |
328 |
Q |
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| T |
27514033 |
tcctttctggttttttctgcggttcctcttcccaccgaaagccaattagaaggtttgggaaggtttcacaatttgaacagacagaatttgaaaaatcaga |
27514132 |
T |
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| Q |
329 |
gaagaaagggaagaagat |
346 |
Q |
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| T |
27514133 |
gaacaaagagaagaagat |
27514150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 53 - 199
Target Start/End: Complemental strand, 8675040 - 8674890
Alignment:
| Q |
53 |
gagagagagtgaacctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagcacgtttctaaaacttcttttga----aga |
148 |
Q |
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| T |
8675040 |
gagagagagtgaacctcttcaccgagctcgatagctcttttaacagcagcatcacgagcattagacttagcgcgtttttcaagcttcttctgatgcttga |
8674941 |
T |
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| Q |
149 |
gtttagcatgaatttcagatcgtttttctttgttcttactcatcgaaggac |
199 |
Q |
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| T |
8674940 |
gtttagcatgaatttcagatcgtttttctttgttcttaatcattgaaggac |
8674890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 151 - 348
Target Start/End: Complemental strand, 39209911 - 39209714
Alignment:
| Q |
151 |
ttagcatgaatttcagatcgtttttctttgttcttactcatcgaaggacagagcagttccttcatttcggtttccgtctttgttctggttttttctgcgg |
250 |
Q |
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| T |
39209911 |
ttagcatgaatttcagatcgtttttctttgttcttactcatcgaaggacggagcagttccttcatttcggtttccgtcactgttctggttttttctgcgg |
39209812 |
T |
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| Q |
251 |
ttcctcttcccaccgaaagccaattaaaaggtttgggaaggtttcacaatttgaacagacggaatttgaaaaatcagagaagaaagggaagaagattg |
348 |
Q |
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| T |
39209811 |
ttcctcttcccaccgaaagccaattagaaggtttgggaaggtttcacaatttgaacagacggaatttgaaaaatcagagaagaaagggaagaagattg |
39209714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 39210001 - 39209906
Alignment:
| Q |
29 |
tcaaaacaacaacagccattcagtgagagagagtgaacctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagca |
124 |
Q |
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| T |
39210001 |
tcaaaacaacaacatccattcagtgagagagagtgaacctcttcaccgagctcgatagctctttcaatagcagcatcgcgagctttcgacttagca |
39209906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 196
Target Start/End: Original strand, 24037019 - 24037194
Alignment:
| Q |
29 |
tcaaaacaacaacagccattcagtgagagagagtga----acctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagca |
124 |
Q |
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|||||||||||||||| ||||| |||||||||| || ||||||||||||| ||||||||| |||| || | || |||||||||||||||||||||| |
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| T |
24037019 |
tcaaaacaacaacagcgattcaatgagagagagagagcgaacctcttcaccgatctcgatagcgcttttaacagcaacatcgcgagctttcgacttagcg |
24037118 |
T |
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| Q |
125 |
cgtttctaaaacttcttttga----agagtttagcatgaatttcagatcgtttttctttgttcttactcatcgaag |
196 |
Q |
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| T |
24037119 |
tgtttctcaagcttcttctgacgcttgagtttagcatgaatttcagatcgttttccttttttcttaatcatcgaag |
24037194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 293
Target Start/End: Original strand, 24037276 - 24037323
Alignment:
| Q |
246 |
tgcggttcctcttcccaccgaaagccaattaaaaggtttgggaaggtt |
293 |
Q |
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| T |
24037276 |
tgcgcttcctcttcccaccgaaagccgatcataaggtttgggaaggtt |
24037323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 293
Target Start/End: Complemental strand, 9461013 - 9460971
Alignment:
| Q |
251 |
ttcctcttcccaccgaaagccaattaaaaggtttgggaaggtt |
293 |
Q |
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| T |
9461013 |
ttcctgttcccaccgaaagccaatcagaaggtttgggaaggtt |
9460971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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