View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17146_high_16 (Length: 342)
Name: NF17146_high_16
Description: NF17146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17146_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 127 - 285
Target Start/End: Complemental strand, 45734599 - 45734441
Alignment:
| Q |
127 |
caagatttataggggtacctatctgttggcgcttttgtgaaagcgttattatatgtttgtatccaaataaaaataaaaacactgtgcaatatagttttcc |
226 |
Q |
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| T |
45734599 |
caagatttataggggtacctatctgttggcgcttttgtgaaagcgttattatatgtttgtatccaaataaaaataaaaacactgtgcaatatagttttcc |
45734500 |
T |
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| Q |
227 |
attttcatgctgtaattctttctcacactctcaacacttgttcaaaccttcttcttctc |
285 |
Q |
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| T |
45734499 |
attttcatgttgtaattctttctcacactctcaacacttgttcaaaccttcttcttctc |
45734441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 45734722 - 45734628
Alignment:
| Q |
4 |
aacataagaaattcgttggtacttgtacttatgtgaggtctatttaaacattgatgtttgctctagtctctcgttttcaaaactcaactttgcat |
98 |
Q |
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| T |
45734722 |
aacataagaaattcgttggtacttatacttatgtgaggtctatttaaacattgatgtttgctttagtctctcgttttcaaaactcaactttgcat |
45734628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 336
Target Start/End: Complemental strand, 45734393 - 45734355
Alignment:
| Q |
298 |
caacccacttgaacctaacccttctatgttctctgctcc |
336 |
Q |
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| T |
45734393 |
caactcacttgaacctaacccttctatgttctcttctcc |
45734355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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