View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17146_high_2 (Length: 712)
Name: NF17146_high_2
Description: NF17146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17146_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 321 - 673
Target Start/End: Complemental strand, 55697099 - 55696747
Alignment:
| Q |
321 |
aatttgattatcaacttcctcaagctatatttaatttatccaggatctcttaatctaggttgttattgcgtgctcagatattttgttctgcaatgttttt |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
55697099 |
aatttgattatcaacttcctcaagctatatttaatttatccaggatctcttaatctaggttgttattgcgtcctcagatattttgttctgcaatgttttt |
55697000 |
T |
|
| Q |
421 |
ctaacaactttatatatcaagatttgataagagatgctgctcagtttttacatttcatattttaacagtctgtttgaaaaaacttggcagatagtgggga |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55696999 |
ctaacaactttatatatcaagatttgataagagatgctgctcagtttttacatttcatattttaacagtctgtttgaaaaaacttggcagatagtgggga |
55696900 |
T |
|
| Q |
521 |
gaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaaggctttcgtggtttgggttcccgtctccacat |
620 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55696899 |
gaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaaggctttcgtggtttgggttcccgtctccacat |
55696800 |
T |
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| Q |
621 |
ttacaagtcccatgaatctggggatcgttttccttcatctcatacatgctttt |
673 |
Q |
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| T |
55696799 |
ttacaagtcccatgaatccggtgatcgtcttccttcatctcatacatgctttt |
55696747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 321 - 367
Target Start/End: Complemental strand, 55697453 - 55697407
Alignment:
| Q |
321 |
aatttgattatcaacttcctcaagctatatttaatttatccaggatc |
367 |
Q |
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| T |
55697453 |
aatttgattatcaacttcctcaagctatatttaatttatccaggatc |
55697407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 128
Target Start/End: Complemental strand, 7033161 - 7033095
Alignment:
| Q |
62 |
tcatggtccatgagaaggccctcgatggggagatgcaacagacatgaaacatcatgtagtgtcattg |
128 |
Q |
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|||||||||| ||| | ||||||||||||||||||||||| |||||| | ||||| |||||||||| |
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| T |
7033161 |
tcatggtccaagagcatgccctcgatggggagatgcaacaaacatgacatatcattaagtgtcattg |
7033095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 7 - 319
Target Start/End: Complemental strand, 32012333 - 32012017
Alignment:
| Q |
7 |
agcccatgacaactcaaccatcatatctaccacaacaagtttggaaacaataacttcatggtccatgagaaggccctcgatggggagatgcaacagacat |
106 |
Q |
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||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32012333 |
agcccataacaactcaaccatcatatctaccacaataagttaggaaacaataacttcatggtccaggagaaggccctcgatggggagatgcaacagacat |
32012234 |
T |
|
| Q |
107 |
gaaacatcatgtagtgtcattgccatcttcccaatcagaagatgaaagctagaagccttgtcgtgtcatctctcgacaaatgcagacaatataccatatt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32012233 |
gaaacatcatgtagtgtcattgccatcttcccaatcagaagatgaaagctagaagccttgtcgtgtcatctctcaacaaatgcagacaatataccatatt |
32012134 |
T |
|
| Q |
207 |
caataatgt----gatgacatgcttgagccaataaagacaacttatatctagggcctgtctgaacgatgactcatgcatcctccctcgtacacctcatgc |
302 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || | |||||||| |
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| T |
32012133 |
caataatgttataaatgacatgcttgagccaataaagacaacttatatctagggcctgtctaaacaatgactcatgcatcctcccctgttcccctcatgc |
32012034 |
T |
|
| Q |
303 |
aaagccttcaacttctt |
319 |
Q |
| |
|
||||||||||||||||| |
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| T |
32012033 |
aaagccttcaacttctt |
32012017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 8e-23; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 498 - 609
Target Start/End: Complemental strand, 9235337 - 9235226
Alignment:
| Q |
498 |
aaaaacttggcagatagtggggagaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaaggctttcgt |
597 |
Q |
| |
|
||||||||||||||| || ||||||||| |||| || ||||||| |||||||| ||||||||||| ||||||||| |||||||||||||||| || ||| |
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| T |
9235337 |
aaaaacttggcagatcgtcgggagaatgtcagcagagcaaaagaaagttcttctgttcttttggacatctgtgaaacatttaccagttgaaggtttccgt |
9235238 |
T |
|
| Q |
598 |
ggtttgggttcc |
609 |
Q |
| |
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|| ||| ||||| |
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| T |
9235237 |
ggcttgagttcc |
9235226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 500 - 590
Target Start/End: Complemental strand, 9246920 - 9246830
Alignment:
| Q |
500 |
aaacttggcagatagtggggagaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaagg |
590 |
Q |
| |
|
||||||||||||| || ||||||||| |||| || |||||||||||||||| ||||| ||||| ||||||||| |||||||||||||||| |
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| T |
9246920 |
aaacttggcagatcgttgggagaatgccagcagagcaaaagaaggttcttctgttcttctggacatctgtgaaacatttaccagttgaagg |
9246830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 497 - 604
Target Start/End: Complemental strand, 9255080 - 9254973
Alignment:
| Q |
497 |
aaaaaacttggcagatagtggggagaatgacagctgaagaaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaaggctttcg |
596 |
Q |
| |
|
|||||||||||||||| || || |||||| |||| || ||| |||||||||||| ||||||||||| ||||||||| ||||||||||| |||| || | |
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| T |
9255080 |
aaaaaacttggcagatcgttggaagaatgtcagcagagcaaaggaaggttcttctgttcttttggacatctgtgaaacatttaccagttaaaggtttcca |
9254981 |
T |
|
| Q |
597 |
tggtttgg |
604 |
Q |
| |
|
|||||||| |
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| T |
9254980 |
tggtttgg |
9254973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 536 - 590
Target Start/End: Complemental strand, 9265047 - 9264993
Alignment:
| Q |
536 |
aaaagaaggttcttcttttcttttggacgtctgtgaaatatttaccagttgaagg |
590 |
Q |
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|
|||||||||||||||| ||||||||||| || |||||| |||||||||| ||||| |
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| T |
9265047 |
aaaagaaggttcttctgttcttttggacatcagtgaaacatttaccagtcgaagg |
9264993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 17362889 - 17362967
Alignment:
| Q |
79 |
gccctcgatggggagatgcaacagacatgaaacatcatgtagtgtcattgccatcttcccaatcagaagatgaaagcta |
157 |
Q |
| |
|
||||||||| |||||||||| ||||||||| || |||| ||||||| || ||||| ||| ||||||||||| |||||| |
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|
| T |
17362889 |
gccctcgattgggagatgcagcagacatgacacgtcatcaagtgtcactgtcatctcccccatcagaagatggaagcta |
17362967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 85 - 195
Target Start/End: Complemental strand, 42229792 - 42229682
Alignment:
| Q |
85 |
gatggggagatgcaacagacatgaaacatcatgtagtgtcattgccatcttcccaatcagaagatgaaagctagaagccttgtcgtgtcatctctcgaca |
184 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| ||||||| | |||| | || |||||||||| |||||||| | || |||||||||| ||| ||| |
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| T |
42229792 |
gatggggagatgcatcagacatgacacatcatcaagtgtcacttccatatcccttatcagaagatagaagctagacgactcctcgtgtcatcactcaaca |
42229693 |
T |
|
| Q |
185 |
aatgcagacaa |
195 |
Q |
| |
|
|| ||| |||| |
|
|
| T |
42229692 |
aaagcaaacaa |
42229682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 43453163 - 43453229
Alignment:
| Q |
90 |
ggagatgcaacagacatgaaacatcatgtagtgtcattgccatcttcccaatcagaagatgaaagct |
156 |
Q |
| |
|
|||||||||||| |||||| ||||||| |||||||||| ||||| ||||| | ||||||| ||||| |
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|
| T |
43453163 |
ggagatgcaacaaacatgacacatcatcaagtgtcattgtcatctccccaaacggaagatggaagct |
43453229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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