View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17146_high_21 (Length: 336)
Name: NF17146_high_21
Description: NF17146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17146_high_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 2 - 250
Target Start/End: Complemental strand, 40375432 - 40375179
Alignment:
| Q |
2 |
taacaaggtgcttcacaaaagtatcaccatcagtcaacatgaaacaattatgatttggccttcttaaatgtttgagatcatttccacacaaataaagggt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
40375432 |
taacaaggtgcttcacaaaagtatcaccatcagtcaacatgaaacaattatgatttggccttcctaaatgtttgagatcatttccacacaaataaagggt |
40375333 |
T |
|
| Q |
102 |
ctagcaa----cctaattttaaaataaaactcatttctaaatataacgagttctattttgcaacaaa-tcgtaaataagaaaaacttttaaccaagaggg |
196 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| ||||||||||||||||||||| |
|
|
| T |
40375332 |
ctagcaacctacctaattttaaaataaaactcatttctaaatataatgagttctattttgcaacaaattcataaataaaaaaaacttttaaccaagaggg |
40375233 |
T |
|
| Q |
197 |
tttgtatatgctctgagtctttcagctttatgaactgccttaactttatttggg |
250 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||| |||| ||||| |
|
|
| T |
40375232 |
tttgtatatgctctgagtctttcagcgttacgaactgccttaattttaattggg |
40375179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 654073 - 654118
Alignment:
| Q |
39 |
catgaaacaattatgatttggccttcttaaatgtttgagatcattt |
84 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
654073 |
catgaaactattatgatttggtcttcttaaatgtttgagattattt |
654118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University