View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17146_high_23 (Length: 334)
Name: NF17146_high_23
Description: NF17146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17146_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 8997198 - 8997521
Alignment:
| Q |
1 |
gctttgtaagaagtatagatacataaaagaatagaaagcaaatttagaaccactgatgctaaatttcattcacactaaaaagcttcgttataaattaaac |
100 |
Q |
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| T |
8997198 |
gctttgtaagaagtatagatacataaaagaatagaaagcaaatttagaaccactgatgctaaatttcattcacactaaaaagcttcattataaattaaac |
8997297 |
T |
|
| Q |
101 |
acctcaaaacaaaattgggatattctgttagtatccgtatcgatgccccatgagaagaaacttgcagctacctatgtaaactaagatcctccgaggttgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
8997298 |
acctcaaaacaaaattgggatattctgttagtatccgtatcgatgccccatgagaagaaacttgcagctacctatataaactaagatcctccaaggttgt |
8997397 |
T |
|
| Q |
201 |
tcagtggttgttttgaccagtaaaaatcaaggaaacttattnnnnnnnnntgtgactcaaatactaaggctacttgtctaagggttatctttatctatca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8997398 |
tcagtggttgttttgaccagtaaaaatcaaggaaacttattaaaaaaaaatgtgactcaaatactaaggctacttgtctaagggttatctttatctatca |
8997497 |
T |
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| Q |
301 |
tcctggtttttgcaactctctctg |
324 |
Q |
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|||||||||||||||||||||||| |
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| T |
8997498 |
tcctggtttttgcaactctctctg |
8997521 |
T |
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