View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17146_high_25 (Length: 325)

Name: NF17146_high_25
Description: NF17146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17146_high_25
NF17146_high_25
[»] chr3 (7 HSPs)
chr3 (21-313)||(4655826-4656118)
chr3 (91-231)||(15956968-15957107)
chr3 (91-163)||(15046664-15046735)
chr3 (94-158)||(38278222-38278285)
chr3 (115-163)||(12774921-12774969)
chr3 (121-162)||(3294631-3294671)
chr3 (123-164)||(19429631-19429672)
[»] scaffold0077 (1 HSPs)
scaffold0077 (88-233)||(29630-29774)
[»] chr7 (7 HSPs)
chr7 (143-233)||(16065080-16065170)
chr7 (92-233)||(11775426-11775567)
chr7 (122-164)||(19381839-19381881)
chr7 (93-163)||(26008571-26008640)
chr7 (120-165)||(16206909-16206954)
chr7 (120-164)||(3136000-3136044)
chr7 (113-165)||(18076517-18076569)
[»] chr4 (3 HSPs)
chr4 (55-165)||(20597254-20597363)
chr4 (122-164)||(12348132-12348174)
chr4 (91-163)||(28799424-28799495)
[»] chr1 (3 HSPs)
chr1 (81-165)||(20406647-20406729)
chr1 (96-161)||(22613871-22613935)
chr1 (113-155)||(21417261-21417303)
[»] scaffold2073 (1 HSPs)
scaffold2073 (82-164)||(365-445)
[»] chr5 (3 HSPs)
chr5 (92-211)||(22447265-22447382)
chr5 (122-165)||(18225738-18225781)
chr5 (121-163)||(17362790-17362831)
[»] chr2 (2 HSPs)
chr2 (91-162)||(34898267-34898337)
chr2 (91-163)||(20509792-20509864)
[»] chr8 (1 HSPs)
chr8 (113-163)||(22888656-22888706)
[»] chr6 (3 HSPs)
chr6 (113-163)||(19991712-19991762)
chr6 (98-165)||(15939542-15939609)
chr6 (114-164)||(19978960-19979009)
[»] scaffold0329 (1 HSPs)
scaffold0329 (74-165)||(1589-1679)
[»] scaffold0018 (2 HSPs)
scaffold0018 (91-162)||(53149-53219)
scaffold0018 (91-162)||(57101-57171)
[»] scaffold0008 (1 HSPs)
scaffold0008 (115-161)||(235805-235851)


Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 21 - 313
Target Start/End: Original strand, 4655826 - 4656118
Alignment:
Q  21 acatcatcaagaacacaattcaccaagttaactgatgcacatattcaactaattcacataattcaccaatgcacataagcaagtatggcatctgtcaagt 120  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  4655826 acatcatcaagtacacaattcaccaagttaactgatgcacatattcaactaattcacataattcaccaatgcacataagcaagtatgacacctgtcaagt 4655925  T
Q  121 tatgcaatgcgcctagacaggacttctatatgcatgtggtaccaagtcaacactgcggtcgtcatctgaagatacatatgtatcataatcatcgccaata 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| || |||||||||||||||||||||||| |||||||    
T  4655926 tatgcaatgcgcctagacaggacttctatatgcatgtggtaccaagtcaacaccgaggtcgtcacctcaagatacatatgtatcataatcattgccaata 4656025  T
Q  221 taaatgcaaagcaattggtctcatttttatcatattgcaaagccaattcattatcaacnnnnnnnctaagtctaatcaatcattgcacaggtt 313  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||       |||||||| ||| ||||||||| |||||    
T  4656026 taaatgcaaagcaatcagtctcatttttatcatattgcaaagccaattcattatcaacaaaaaaactaagtctgatccatcattgcataggtt 4656118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 231
Target Start/End: Original strand, 15956968 - 15957107
Alignment:
Q  91 gcacataagcaagtatggcatctgtcaagttatgcaatgcgcctagacaggacttctatatgcatgtggtaccaagtcaacactgcggtcgtcatctgaa 190  Q
    ||||||||||||| ||| || |||||||||||||||||||||||||||| ||| |||||||||||||||||| || || ||||   |||| ||| || ||    
T  15956968 gcacataagcaagaatgacacctgtcaagttatgcaatgcgcctagacacgac-tctatatgcatgtggtactaa-tcgacaccaaggtcatcacctcaa 15957065  T
Q  191 gatacatatgtatcat-aatcatcgccaatataaatgcaaag 231  Q
    ||||||| |||||||| |||| ||||| |||| ||| |||||    
T  15957066 gatacatttgtatcatcaatcgtcgcctatatgaatacaaag 15957107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 15046735 - 15046664
Alignment:
Q  91 gcacataagcaagtatggcatctgtcaagttatgcaatgcgcctagacaggacttctatatgcatgtggtacc 163  Q
    ||||||||||||||||| ||  ||| |||||||||||||||||||||||  || |||||||||||||||||||    
T  15046735 gcacataagcaagtatgacacttgttaagttatgcaatgcgcctagacacaac-tctatatgcatgtggtacc 15046664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 38278285 - 38278222
Alignment:
Q  94 cataagcaagtatggcatctgtcaagttatgcaatgcgcctagacaggacttctatatgcatgtg 158  Q
    |||||||||||||| ||  ||||||||||||||||||||||||||| ||| ||| ||||||||||    
T  38278285 cataagcaagtatgacacatgtcaagttatgcaatgcgcctagacacgac-tctctatgcatgtg 38278222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 12774969 - 12774921
Alignment:
Q  115 tcaagttatgcaatgcgcctagacaggacttctatatgcatgtggtacc 163  Q
    ||||| |||||||||||| || ||| |||||||||||||||||||||||    
T  12774969 tcaagatatgcaatgcgcttaaacacgacttctatatgcatgtggtacc 12774921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 3294671 - 3294631
Alignment:
Q  121 tatgcaatgcgcctagacaggacttctatatgcatgtggtac 162  Q
    ||||||||||||||||||| ||| ||||||||||||||||||    
T  3294671 tatgcaatgcgcctagacacgac-tctatatgcatgtggtac 3294631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 19429631 - 19429672
Alignment:
Q  123 tgcaatgcgcctagacaggacttctatatgcatgtggtacca 164  Q
    ||||||||||||||||| |||| ||||||||||| |||||||    
T  19429631 tgcaatgcgcctagacatgactcctatatgcatgcggtacca 19429672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 88 - 233
Target Start/End: Complemental strand, 29774 - 29630
Alignment:
Q  88 aatgcacataagcaagtatggcatctgtcaagttatgcaatgcgcctagacaggacttctatatgcatgtggtaccaagtcaacactgcggtcgtcatct 187  Q
    |||||||||||||||||||| || ||||||||||||||||||||| |||||| |||| ||||||||| ||||||| |||||||||| | |||||||| ||    
T  29774 aatgcacataagcaagtatgacacctgtcaagttatgcaatgcgcatagacacgact-ctatatgcacgtggtacgaagtcaacaccgaggtcgtcacct 29676  T
Q  188 gaagatacatatgtatcataatcatcgccaatataaatgcaaagca 233  Q
     ||||||||| |||||||||||| |||||||||| |||| ||||||    
T  29675 caagatacatctgtatcataatcgtcgccaatatgaatgaaaagca 29630  T

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Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 16065080 - 16065170
Alignment:
Q  143 cttctatatgcatgtggtaccaagtcaacactgcggtcgtcatctgaagatacatatgtatcataatcatcgccaatataaatgcaaagca 233  Q
    |||||| |||||||||||||||||||||||| | ||| |||| || |||||||||||||||||||||||| |||||||| |||||||||||    
T  16065080 cttctagatgcatgtggtaccaagtcaacaccgaggttgtcacctcaagatacatatgtatcataatcatagccaatatgaatgcaaagca 16065170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 92 - 233
Target Start/End: Complemental strand, 11775567 - 11775426
Alignment:
Q  92 cacataagcaagtatggcatctgtcaagttatgcaatgcgccta-gacaggacttctatatgcatgtggtaccaagtcaacactgcggtcgtcatctgaa 190  Q
    ||||||| |||||||| || |||||||||||||||||| ||||| |||   ||| |||||||||||||| |||| |||| |||   |||||||| || ||    
T  11775567 cacataatcaagtatgacacctgtcaagttatgcaatgtgcctatgacccaact-ctatatgcatgtgggacca-gtcatcaccaaggtcgtcacctcaa 11775470  T
Q  191 gatacatatgtatcat-aatcatcgccaatataaatgcaaagca 233  Q
    |||||||||||||||| ||||||||||||||| |||||||||||    
T  11775469 gatacatatgtatcattaatcatcgccaatatgaatgcaaagca 11775426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 164
Target Start/End: Original strand, 19381839 - 19381881
Alignment:
Q  122 atgcaatgcgcctagacaggacttctatatgcatgtggtacca 164  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  19381839 atgcaatgcgcctagacaggacttttatatgcatgtggtacca 19381881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 26008640 - 26008571
Alignment:
Q  93 acataagcaagtatggcatctgtcaagttatgcaatgcgcct-agacaggacttctatatgcatgtggtacc 163  Q
    ||||||||||||||| || ||||||| ||||||||||||||| ||||| ||| | |||||||||||||||||    
T  26008640 acataagcaagtatgacacctgtcaa-ttatgcaatgcgcctaagacacgac-tatatatgcatgtggtacc 26008571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 16206909 - 16206954
Alignment:
Q  120 ttatgcaatgcgcctagacaggacttctatatgcatgtggtaccaa 165  Q
    |||||||||||||||||||| |||  | ||||||||||||||||||    
T  16206909 ttatgcaatgcgcctagacacgacaccaatatgcatgtggtaccaa 16206954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 3136000 - 3136044
Alignment:
Q  120 ttatgcaatgcgcctagacaggacttctatatgcatgtggtacca 164  Q
    |||||| ||||||||||||| |||||||| |||| ||||||||||    
T  3136000 ttatgctatgcgcctagacacgacttctacatgcttgtggtacca 3136044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 18076517 - 18076569
Alignment:
Q  113 tgtcaagttatgcaatgcgcctagacaggacttctatatgcatgtggtaccaa 165  Q
    |||||| |||||||||| || |||||  |||| ||||||||||||||||||||    
T  18076517 tgtcaaattatgcaatgtgcgtagacgcgactcctatatgcatgtggtaccaa 18076569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 20597363 - 20597254
Alignment:
Q  55 atgcacatattcaactaattcacataattcaccaatgcacataagcaagtatggcatctgtcaagttatgcaatgcgcctagacaggacttctatatgca 154  Q
    ||||||||||||||||||||||||| ||||||||| | ||||||| || |||| |   |||||| | |||||||||||||| ||| ||||||||||||||    
T  20597363 atgcacatattcaactaattcacatgattcaccaa-gtacataagaaattatgactcatgtcaaatcatgcaatgcgcctatacacgacttctatatgca 20597265  T
Q  155 tgtggtaccaa 165  Q
    ||| |||||||    
T  20597264 tgtcgtaccaa 20597254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 164
Target Start/End: Complemental strand, 12348174 - 12348132
Alignment:
Q  122 atgcaatgcgcctagacaggacttctatatgcatgtggtacca 164  Q
    |||||||||||||||||| |||| ||||||| |||||||||||    
T  12348174 atgcaatgcgcctagacacgactcctatatgtatgtggtacca 12348132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 163
Target Start/End: Original strand, 28799424 - 28799495
Alignment:
Q  91 gcacataagcaagtatggcatctgtcaagttatgcaatgcgcctagacaggacttctatatgcatgtggtacc 163  Q
    |||||||| ||| |||| ||| |||||| ||||||||||| |||| ||| ||||| |||||||||||| ||||    
T  28799424 gcacataa-caattatgacatttgtcaaattatgcaatgcacctaaacacgacttatatatgcatgtgctacc 28799495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 20406647 - 20406729
Alignment:
Q  81 attcaccaatgcacataagcaagtatggcatctgtcaagttatgcaatgcgcctagacaggacttctatatgcatgtggtaccaa 165  Q
    ||||||||| ||||| ||||||||| | || ||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  20406647 attcaccaa-gcacacaagcaagtacgacacctgtcaagttatggaatgcgcctagacaggac-tctatatgcatgtggtaccaa 20406729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 22613871 - 22613935
Alignment:
Q  96 taagcaagtatggcatctgtcaagttatgcaatgcgcctagacaggacttctatatgcatgtggta 161  Q
    |||||||||| | || |||||||||||||||||||||||||||| ||| ||||||| |||||||||    
T  22613871 taagcaagtacgacacctgtcaagttatgcaatgcgcctagacacgac-tctatattcatgtggta 22613935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 21417261 - 21417303
Alignment:
Q  113 tgtcaagttatgcaatgcgcctagacaggacttctatatgcat 155  Q
    ||||||| ||||||||||||||| ||| |||||||||||||||    
T  21417261 tgtcaagatatgcaatgcgcctaaacacgacttctatatgcat 21417303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2073 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold2073
Description:

Target: scaffold2073; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 365 - 445
Alignment:
Q  82 ttcaccaatgcacataagcaagtatggcatctgtcaagttatgcaatgcgcctagacaggacttctatatgcatgtggtacca 164  Q
    |||||||| ||||||||| | ||||| || |||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  365 ttcaccaa-gcacataagaaggtatgacacctgtcaagttatgcaatgcgcctagacacgac-tctatatgcatgtggtacca 445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 22447265 - 22447382
Alignment:
Q  92 cacataagcaagtatggcatctgtcaagttatgcaatgcgcctagacaggacttctatatgcatgtggtaccaagtcaacactgcggtcgtcatctgaag 191  Q
    |||||||||||||||| ||  ||||||||| ||||||| ||||||||| ||  ||||||||||||||||||||| ||| |     ||||||||||| |||    
T  22447265 cacataagcaagtatgacacttgtcaagttttgcaatgtgcctagacacga-gtctatatgcatgtggtaccaa-tcaccgtcaaggtcgtcatctcaag 22447362  T
Q  192 atacatatgtatcataatca 211  Q
    |||||| |||||||||||||    
T  22447363 atacatctgtatcataatca 22447382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 18225781 - 18225738
Alignment:
Q  122 atgcaatgcgcctagacaggacttctatatgcatgtggtaccaa 165  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  18225781 atgcaatgcgcctagacacgacttctatatgcatgtggtaccaa 18225738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 17362790 - 17362831
Alignment:
Q  121 tatgcaatgcgcctagacaggacttctatatgcatgtggtacc 163  Q
    ||||||||||||||||||| ||| |||||||||||||||||||    
T  17362790 tatgcaatgcgcctagacacgac-tctatatgcatgtggtacc 17362831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 34898337 - 34898267
Alignment:
Q  91 gcacataagcaagtatggcatctgtcaagttatgcaatgcgcctagacaggacttctatatgcatgtggtac 162  Q
    |||| |||||||||||| || ||||||||||||||||| || ||||||| ||| ||||||||||||||||||    
T  34898337 gcacgtaagcaagtatgacacctgtcaagttatgcaatacgtctagacatgac-tctatatgcatgtggtac 34898267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 163
Target Start/End: Original strand, 20509792 - 20509864
Alignment:
Q  91 gcacataagcaagtatggcatctgtcaagttatgcaatgcgcctagacaggacttctatatgca-tgtggtacc 163  Q
    |||||||||||| |||  || |||||||||||||||||||||||||||| ||| |||||||||| |||||||||    
T  20509792 gcacataagcaattataacacctgtcaagttatgcaatgcgcctagacacgac-tctatatgcattgtggtacc 20509864  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 22888656 - 22888706
Alignment:
Q  113 tgtcaagttatgcaatgcgcctagacaggacttctatatgcatgtggtacc 163  Q
    |||||||||||||||||| |||||||  |||||||||||||||||||||||    
T  22888656 tgtcaagttatgcaatgcccctagactcgacttctatatgcatgtggtacc 22888706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 19991762 - 19991712
Alignment:
Q  113 tgtcaagttatgcaatgcgcctagacaggacttctatatgcatgtggtacc 163  Q
    |||||||||||| |||||||||| ||| |||||||||||||||||||||||    
T  19991762 tgtcaagttatgaaatgcgcctaaacacgacttctatatgcatgtggtacc 19991712  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 15939609 - 15939542
Alignment:
Q  98 agcaagtatggcatctgtcaagttatgcaatgcgcctagacaggacttctatatgcatgtggtaccaa 165  Q
    |||||||||| ||  ||| || || ||||||||||||||||| |||| ||||||||||||||||||||    
T  15939609 agcaagtatgacacatgttaaattttgcaatgcgcctagacacgactcctatatgcatgtggtaccaa 15939542  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 164
Target Start/End: Original strand, 19978960 - 19979009
Alignment:
Q  114 gtcaagttatgcaatgcgcctagacaggacttctatatgcatgtggtacca 164  Q
    |||||||||||||||||| ||||||| |||  |||||||||||||||||||    
T  19978960 gtcaagttatgcaatgcgtctagacacgac-actatatgcatgtggtacca 19979009  T

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Target: scaffold0329 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 165
Target Start/End: Original strand, 1589 - 1679
Alignment:
Q  74 tcacataattcaccaatgcacataagcaagtatggcatctgtcaagttatgcaatgcgcctagacaggacttctatatgcatgtggtaccaa 165  Q
    |||||| | ||||||| |||||||||||| |||| |   |||||| | |||||||||||||||||| ||||  |||||||||||||||||||    
T  1589 tcacatcaatcaccaa-gcacataagcaattatgactcatgtcaaatcatgcaatgcgcctagacacgactattatatgcatgtggtaccaa 1679  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 162
Target Start/End: Original strand, 53149 - 53219
Alignment:
Q  91 gcacataagcaagtatggcatctgtcaagttatgcaatgcgcctagacaggacttctatatgcatgtggtac 162  Q
    ||||||||||||||||| ||  ||||||| ||||||||||||||| |||  || |||||||||||| |||||    
T  53149 gcacataagcaagtatgacacatgtcaagctatgcaatgcgcctaaacacaac-tctatatgcatgcggtac 53219  T

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Target: scaffold0018; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 162
Target Start/End: Original strand, 57101 - 57171
Alignment:
Q  91 gcacataagcaagtatggcatctgtcaagttatgcaatgcgcctagacaggacttctatatgcatgtggtac 162  Q
    ||||||||||||||||| ||  ||||||| ||||||||||||||| |||  || |||||||||||| |||||    
T  57101 gcacataagcaagtatgacacatgtcaagctatgcaatgcgcctaaacacaac-tctatatgcatgcggtac 57171  T

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Target: scaffold0008 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 235805 - 235851
Alignment:
Q  115 tcaagttatgcaatgcgcctagacaggacttctatatgcatgtggta 161  Q
    |||| ||||| |||||||||| ||| |||||||||||||||||||||    
T  235805 tcaaattatgaaatgcgcctaaacacgacttctatatgcatgtggta 235851  T

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