View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17146_high_28 (Length: 321)
Name: NF17146_high_28
Description: NF17146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17146_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 30 - 301
Target Start/End: Original strand, 42330066 - 42330338
Alignment:
| Q |
30 |
ctcaagtcttcagctgttctcatttgttgcttcacgtcgagccttttgtcattctcatttgttgctagttggtactttgctctgagaccattgaaagcgt |
129 |
Q |
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| T |
42330066 |
ctcaagtcttcagttgttctcatttgttgcttcacgtcaagccttttgtcattctcatttgttgctagttggtactttgctctgagaccattgaaagcgt |
42330165 |
T |
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| Q |
130 |
aacgaatcagccataaacacctgacaaaagaa-gggttagatagtgttttgctccctaccatttgagcaaaatttggttgaaacattgtnnnnnnnttag |
228 |
Q |
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| T |
42330166 |
aacgaatcagccataaacacctgacaaaagaaggggttaaatagtgttttgcttcctaccatttgagcaaaatttggttgaaaccttgtaaaaaaaatag |
42330265 |
T |
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| Q |
229 |
atttcaacattgttttctgaaaattctttaattttgaacattcatgacaactgaatgtgtaaaatgatgatgt |
301 |
Q |
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| T |
42330266 |
atttcaacattgttttctgaaaattctttgattttgaacattaatgacaactgaatgtgtaaaatgatgatgt |
42330338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 44 - 210
Target Start/End: Original strand, 42328338 - 42328506
Alignment:
| Q |
44 |
tgttctcatttgttgcttcacgtcgagccttttgtcattctcatttgttgctagttggtactttgctctgagaccattgaaagcgtaacgaatcagccat |
143 |
Q |
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||||||||||||||||| ||| || |||||| | ||||||||| |||||| |||||| |||| | ||||| |||||||||||||| |||||| ||| |
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| T |
42328338 |
tgttctcatttgttgctacacctcaagccttccattgttctcattttttgctacttggtattttgttttgagataattgaaagcgtaactaatcagtcat |
42328437 |
T |
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| Q |
144 |
aaacacctgac--aaaagaagggttagatagtgttttgctccctaccatttgagcaaaatttggttgaa |
210 |
Q |
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| T |
42328438 |
aaatacctgacaaaaaaaaaaggttaaatagtgttttgctccctcccatatgaacgaaatttggctgaa |
42328506 |
T |
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