View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17147_low_1 (Length: 489)
Name: NF17147_low_1
Description: NF17147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17147_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 16 - 484
Target Start/End: Complemental strand, 47457169 - 47456700
Alignment:
| Q |
16 |
aatcaacacaacaccaaatgtaatatgtggtttactattgcataggtatctcaaggatcacacaattttttcacaatcctccaccagtagtattacaatt |
115 |
Q |
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| T |
47457169 |
aatcaacacaacaccaaatgtaatatgtggtttactattgcataggtatctcaaggatcacacaattttttcacaatcctccaccagtagtattacaatt |
47457070 |
T |
|
| Q |
116 |
gaactttttaaccttctcaatacatctgcattatacctgttctgatgcagtattgtcccccttgttagtaacaacaaattttcattcccaaaaagcatgg |
215 |
Q |
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| T |
47457069 |
gaactttttaaccttctcaatacatctgcattatacctgttctgatgcagtattgtcccccttgttagtaacaacaaattttcattcccaaaaagcatgg |
47456970 |
T |
|
| Q |
216 |
tagaaagcatacccaaatctgtcataccgaattataaattcatggttaccttgagttcctcaatgtcatctaaattatttataggtacaagcaagcaggt |
315 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47456969 |
tagagagcatacccaaatctgtcataccgaattataaattcatggttaccttgagttcctcaatgtcatctaaattatttataggtacaagcaagcaggt |
47456870 |
T |
|
| Q |
316 |
catcaacatcttagctttgttctgcaccctcatataaacaacatgaactactgcagaatgggagaatcgttgctggaacaagaaagagtctatcattttg |
415 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47456869 |
catcaacatcttagctttgttctgcaccctcacataaacaacatgaactactgcagaatgggagaatcgttgctggaacaagaaagagtctatcattttg |
47456770 |
T |
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| Q |
416 |
t-ttttaagtctttggtccttgttttatcccatataaagctatcttcagcctatacaccatgcctttgct |
484 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
47456769 |
ttttttaagtctttggtccttgttttatcccatataaagctatcttcagcctatacaccatgtctttgct |
47456700 |
T |
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