View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17147_low_3 (Length: 382)
Name: NF17147_low_3
Description: NF17147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17147_low_3 |
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| [»] scaffold0392 (1 HSPs) |
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Alignment Details
Target: scaffold0392 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: scaffold0392
Description:
Target: scaffold0392; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 371
Target Start/End: Complemental strand, 15917 - 15565
Alignment:
| Q |
19 |
gtcctaagttccaatatcccaaactggacccaacaatttactttaaacaacnnnnnnncattgcttgctatcgtattgaatgacataatcttcaacaaaa |
118 |
Q |
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| T |
15917 |
gtcctaagttccaatatcccaaactggacccaacaatttactttaaacaacaataaa-cattgcttgctatcgtattgaatgacataatcttcaacaaca |
15819 |
T |
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| Q |
119 |
tagctaaaatataactaatcgtacaaccaccatccnnnnnnntattattcactttaatcaattttttctttgtt-attttccatatcttagttttcttca |
217 |
Q |
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| T |
15818 |
tagctaaaatatgactaatcgtaccaccaccacccaaaaaaatatcattcactttaatcaattttttctttgtttattttccatatcttagttttcttca |
15719 |
T |
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| Q |
218 |
cggagattgagttagattcaatccatcttgcaggcaaagtgcaataatataacttctcacatataaaactttttaatcatttctcaaaaccatgttaaga |
317 |
Q |
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| T |
15718 |
cggagattgagttagattcaatccatcttgcaggcaaagtgcaataatataacttctcacatataaaactttttaatcatttctcaaaaccatgttaaga |
15619 |
T |
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| Q |
318 |
ttggcttattggtggctcactttttgttgattttatatataactttttaccttt |
371 |
Q |
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| T |
15618 |
ttggcttattggtggctcactttttgttgattttatatataactttttaccttt |
15565 |
T |
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