View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17147_low_4 (Length: 376)

Name: NF17147_low_4
Description: NF17147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17147_low_4
NF17147_low_4
[»] chr6 (26 HSPs)
chr6 (1-133)||(2930037-2930170)
chr6 (151-323)||(2659238-2659410)
chr6 (27-153)||(2952701-2952831)
chr6 (185-301)||(2997654-2997770)
chr6 (185-308)||(2926865-2926988)
chr6 (1-153)||(2935328-2935482)
chr6 (185-302)||(3004037-3004154)
chr6 (184-308)||(2951646-2951770)
chr6 (27-153)||(3002964-3003094)
chr6 (27-153)||(2974752-2974880)
chr6 (167-302)||(2982559-2982694)
chr6 (185-311)||(2934304-2934430)
chr6 (185-302)||(2964193-2964310)
chr6 (3-111)||(2954809-2954921)
chr6 (1-101)||(2965258-2965364)
chr6 (1-101)||(2986474-2986575)
chr6 (1-64)||(2996663-2996725)
chr6 (195-289)||(2973728-2973822)
chr6 (28-101)||(2938197-2938271)
chr6 (72-152)||(2979775-2979855)
chr6 (29-101)||(2983619-2983698)
chr6 (323-376)||(2927012-2927065)
chr6 (323-376)||(3003948-3004001)
chr6 (122-153)||(2965366-2965397)
chr6 (124-153)||(2927956-2927985)
chr6 (124-153)||(2986579-2986608)
[»] chr7 (2 HSPs)
chr7 (176-302)||(3338877-3339003)
chr7 (1-96)||(3339754-3339850)
[»] scaffold0024 (3 HSPs)
scaffold0024 (25-147)||(43551-43680)
scaffold0024 (187-302)||(35480-35598)
scaffold0024 (94-137)||(34257-34300)
[»] chr3 (3 HSPs)
chr3 (164-281)||(49618079-49618196)
chr3 (25-107)||(49619171-49619255)
chr3 (41-101)||(49614205-49614267)


Alignment Details
Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 2930037 - 2930170
Alignment:
Q  1 taattattgctattagtattatcaaccaatgtacgttgtttgtttcaatggtttcattattttgtg--ttgtattagatcgaaattgtaatttcatataa 98  Q
    ||||||||| ||||  |||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||    
T  2930037 taattattgttattcttattatca-ccaatgtacgttgtttgtttcaatggtttcattattttgtgtgttgtattagatcaaaattgtaatttcatataa 2930135  T
Q  99 ataggtgttctgctaaacaaacgagcaacttgatc 133  Q
    |||||||||||||||||||||||||||||||||||    
T  2930136 ataggtgttctgctaaacaaacgagcaacttgatc 2930170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 151 - 323
Target Start/End: Complemental strand, 2659410 - 2659238
Alignment:
Q  151 aacgaaccaacacaagtttaaacaccttggtcatctacatagattctatcttacctcatttcaaacgctgttattccgaaaccctaccattttctcatga 250  Q
    ||||||||||  || ||||| |||||||||||| | ||||| | |||| |||| ||| ||||||| | ||||||||||||||||||||||||||| || |    
T  2659410 aacgaaccaatgcatgtttagacaccttggtcagcaacataaaatctaacttatctcgtttcaaaagttgttattccgaaaccctaccattttctgataa 2659311  T
Q  251 tgatcttgttaagttaatcttaatcgattcctgttttattattcaactttttcggacagacccttatgatgat 323  Q
    ||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||  ||||||||||    
T  2659310 tgaacttgttaagttaatcttaatcgattcctgttttataattcaacttttttggacatactattatgatgat 2659238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 27 - 153
Target Start/End: Original strand, 2952701 - 2952831
Alignment:
Q  27 caatgtacgttgtttgtttcaatggtttcatta----ttttgtgttgtattagatcgaaattgtaatttcatataaataggtgttctgctaaacaaacga 122  Q
    |||||||||||||||||||||||||||||||||     ||||||||| ||||||| |||||||||||||||||||||| |||||||||||||| |||  |    
T  2952701 caatgtacgttgtttgtttcaatggtttcattaatctctttgtgttgcattagattgaaattgtaatttcatataaatgggtgttctgctaaataaaaaa 2952800  T
Q  123 gcaacttgatcatgttgtattgttgttgaac 153  Q
    |||||||||||||||||||||||||||||||    
T  2952801 gcaacttgatcatgttgtattgttgttgaac 2952831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 185 - 301
Target Start/End: Complemental strand, 2997770 - 2997654
Alignment:
Q  185 ctacatagattctatcttacctcatttcaaacgctgttattccgaaaccctaccattttctcatgatgatcttgttaagttaatcttaatcgattcctgt 284  Q
    |||| |||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  2997770 ctacgtagattctatcttatctaatttcaaacgttgttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccggt 2997671  T
Q  285 tttattattcaactttt 301  Q
    ||||| ||| |||||||    
T  2997670 tttataattgaactttt 2997654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 185 - 308
Target Start/End: Original strand, 2926865 - 2926988
Alignment:
Q  185 ctacatagattctatcttacctcatttcaaacgctgttattccgaaaccctaccattttctcatgatgatcttgttaagttaatcttaatcgattcctgt 284  Q
    ||||||||| ||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||  |    
T  2926865 ctacatagaatctatcttatctgatttcaaacgttgttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcaattccgct 2926964  T
Q  285 tttattattcaactttttcggaca 308  Q
    ||||| |||||||||||| |||||    
T  2926965 tttataattcaacttttttggaca 2926988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 2935328 - 2935482
Alignment:
Q  1 taattattgctattagtattatcaaccaatgtacgttgtttgtttcaatggtttcatta---ttttgtgttgtattagatcgaaattgtaatttcatata 97  Q
    |||||||| |||||||||||||    |||||||||||||||||||||||||||||||||   |||||||||| ||||||| |||||||||||||||||||    
T  2935328 taattatttctattagtattat-tttcaatgtacgttgtttgtttcaatggtttcattatctttttgtgttgcattagattgaaattgtaatttcatata 2935426  T
Q  98 aataggtgttctgctaaacaaacgagcaacttgatcatgttgtattgttgttgaac 153  Q
    ||| ||||||||| |||| |||  ||||  ||||||||||||||||||||||||||    
T  2935427 aatgggtgttctgttaaataaaaaagcatattgatcatgttgtattgttgttgaac 2935482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 185 - 302
Target Start/End: Complemental strand, 3004154 - 3004037
Alignment:
Q  185 ctacatagattctatcttacctcatttcaaacgctgttattccgaaaccctaccattttctcatgatgatcttgttaagttaatcttaatcgattcctgt 284  Q
    ||||||||| ||| ||||| || |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |    
T  3004154 ctacatagaatctgtcttatctgatttcaaacgttgttattccgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgct 3004055  T
Q  285 tttattattcaacttttt 302  Q
    ||||| ||||||||||||    
T  3004054 tttataattcaacttttt 3004037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 184 - 308
Target Start/End: Original strand, 2951646 - 2951770
Alignment:
Q  184 tctacatagattctatcttacctcatttcaaacgctgttattccgaaaccctaccattttctcatgatgatcttgttaagttaatcttaatcgattcctg 283  Q
    |||||||||| ||||||||| || |||||||| | |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||      
T  2951646 tctacatagaatctatcttatctgatttcaaaagttgttattctgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgc 2951745  T
Q  284 ttttattattcaactttttcggaca 308  Q
    |||||| |||||||||||| |||||    
T  2951746 ttttataattcaacttttttggaca 2951770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 27 - 153
Target Start/End: Complemental strand, 3003094 - 3002964
Alignment:
Q  27 caatgtacgttgtttgtttcaatg-gtttcattat---tttgtgttgtattagatcgaaattgtaatttcatataaataggtgttctgctaaacaaacga 122  Q
    |||||||||| ||||||||||||  ||||||||||   ||||||||| || |||| |||||||||||||||||||||||||||||||||| || ||| ||    
T  3003094 caatgtacgtagtttgtttcaatatgtttcattatctttttgtgttgcatcagattgaaattgtaatttcatataaataggtgttctgctgaataaaaga 3002995  T
Q  123 gcaacttgatcatgttgtattgttgttgaac 153  Q
    |||||||||||||||||||||||||||||||    
T  3002994 gcaacttgatcatgttgtattgttgttgaac 3002964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 27 - 153
Target Start/End: Original strand, 2974752 - 2974880
Alignment:
Q  27 caatgtacgttgtttgtttcaatggtttcattat---tttgtgttgtattagatcgaaattgtaatttcatataaataggtgttctgctaaacaaacgag 123  Q
    |||||||||||||||||||||||| |||||||||   ||||||||| ||||||| |||||| |||||||||||||||||| ||||||||||| | |  ||    
T  2974752 caatgtacgttgtttgtttcaatg-tttcattatctttttgtgttgcattagattgaaattataatttcatataaataggagttctgctaaatagaaaag 2974850  T
Q  124 caacttgatcatgttgtattgttgttgaac 153  Q
    ||||||||||||||||||||||||||||||    
T  2974851 caacttgatcatgttgtattgttgttgaac 2974880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 167 - 302
Target Start/End: Original strand, 2982559 - 2982694
Alignment:
Q  167 tttaaacaccttggtcatctacatagattctatcttacctcatttcaaacgctgttattccgaaaccctaccattttctcatgatgatcttgttaagtta 266  Q
    |||||||  |||||||  |||| |||||||||||||| || ||||||||| ||||||||| ||| ||||||||||||||||| |||| ||||||||||||    
T  2982559 tttaaacgacttggtctgctacgtagattctatcttatctgatttcaaacactgttattctgaacccctaccattttctcataatgaacttgttaagtta 2982658  T
Q  267 atcttaatcgattcctgttttattattcaacttttt 302  Q
    |||||||||||||||  |||||| ||||||||||||    
T  2982659 atcttaatcgattccgcttttataattcaacttttt 2982694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 185 - 311
Target Start/End: Original strand, 2934304 - 2934430
Alignment:
Q  185 ctacatagattctatcttacctcatttcaaacgctgttattccgaaaccctaccattttctcatgatgatcttgttaagttaatcttaatcgattcctgt 284  Q
    ||||||||| ||||||||| || |||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||  |    
T  2934304 ctacatagaatctatcttatctgatttcaaacgttgttattctgaaaccctaccattttctcatgatgaacttgttaagttaattttaatagattccgct 2934403  T
Q  285 tttattattcaactttttcggacagac 311  Q
    ||||| |||||||||||| ||| ||||    
T  2934404 tttataattcaacttttttggagagac 2934430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 185 - 302
Target Start/End: Original strand, 2964193 - 2964310
Alignment:
Q  185 ctacatagattctatcttacctcatttcaaacgctgttattccgaaaccctaccattttctcatgatgatcttgttaagttaatcttaatcgattcctgt 284  Q
    |||||||||| |||||||| || |||||||| |||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||  ||    
T  2964193 ctacatagatgctatcttatctgatttcaaatgctgttattccgaaactctaccattttctcatgatgaacttgtcaagttaatcttaatcgattctggt 2964292  T
Q  285 tttattattcaacttttt 302  Q
    ||||| ||| ||||||||    
T  2964293 tttataattgaacttttt 2964310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 2954809 - 2954921
Alignment:
Q  3 attattgctattagtattatcaaccaatgtacgttgtttgtttcaatggtttcattattttgtgt----tgta-ttagatcgaaattgtaatttcatata 97  Q
    |||||||||||||||||||||| ||||||||  ||||||||||| ||||||||||||||||||||    |||| ||||||||| ||||||||||||||||    
T  2954809 attattgctattagtattatca-ccaatgtaacttgtttgtttctatggtttcattattttgtgtgttgtgtacttagatcgatattgtaatttcatata 2954907  T
Q  98 aataggtgttctgc 111  Q
    ||||||| ||||||    
T  2954908 aataggtcttctgc 2954921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 2965258 - 2965364
Alignment:
Q  1 taattattgctattagtattatcaaccaatgtacgttgtttgtttcaatggtttcatta----ttttgtgttgt---attagatcgaaattgtaatttca 93  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    || ||||||||    |||||| |||||||||||||||    
T  2965258 taattattgctattagtattatca-ccaatgtacgttgtttgtttcaatggtttcattatcttttgtgtgttgtgtccttagattgaaattgtaatttca 2965356  T
Q  94 tataaata 101  Q
    ||||||||    
T  2965357 tataaata 2965364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 2986474 - 2986575
Alignment:
Q  1 taattattgctattagtattatcaaccaatgtacgttgtttgtttcaatggtttcatta--ttttgtgttgtattagatcgaaattgtaatttcatataa 98  Q
    ||||||||  ||||| |||||||| |||| |||| ||||||||||||||||||||||||  || |||||| | |||||||||||||||||||||||||||    
T  2986474 taattattattattattattatca-ccaacgtacattgtttgtttcaatggtttcattagtttgtgtgttttgttagatcgaaattgtaatttcatataa 2986572  T
Q  99 ata 101  Q
    |||    
T  2986573 ata 2986575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 2996725 - 2996663
Alignment:
Q  1 taattattgctattagtattatcaaccaatgtacgttgtttgtttcaatggtttcattattttg 64  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  2996725 taattattgctattagtattatca-ccaatgtaagttgtttgtttcaatggtttcattattttg 2996663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 195 - 289
Target Start/End: Original strand, 2973728 - 2973822
Alignment:
Q  195 tctatcttacctcatttcaaacgctgttattccgaaaccctaccattttctcatgatgatcttgttaagttaatcttaatcgattcctgttttat 289  Q
    ||||||||| || |||||||| ||||||||||| |||||||| |||||||||||  ||| |||||||||||||| ||||| |||||| |||||||    
T  2973728 tctatcttatctgatttcaaaggctgttattccaaaaccctatcattttctcatattgaacttgttaagttaattttaatggattccggttttat 2973822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 2938197 - 2938271
Alignment:
Q  28 aatgtacgttgtttgtttcaatggtttcattattttgtgt--tgtattagatcgaaattgtaatttcatataaata 101  Q
    ||||||||||||||||||||||| ||||||||||||||||  ||| ||||||||||| |||||||| |||||||||    
T  2938197 aatgtacgttgtttgtttcaatg-tttcattattttgtgtgttgtgttagatcgaaaatgtaatttgatataaata 2938271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 2979775 - 2979855
Alignment:
Q  72 ttagatcgaaattgtaatttcatataaataggtgttctgctaaacaaacgagcaacttgatcatgttgtattgttgttgaa 152  Q
    |||||| |||||||||| ||||||||||| |||||||||| ||| |||  |||||||| ||||||||| ||||||||||||    
T  2979775 ttagattgaaattgtaagttcatataaattggtgttctgccaaataaaaaagcaactttatcatgttgcattgttgttgaa 2979855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 2983619 - 2983698
Alignment:
Q  29 atgtacgttgtttgtttcaatggtttcattattt----tgtgttgt---attagatcgaaattgtaatttcatataaata 101  Q
    |||||||||||||||||||||||||||||||| |    ||||||||    |||||| |||||||||||||||||||||||    
T  2983619 atgtacgttgtttgtttcaatggtttcattatatttcgtgtgttgtgtacttagattgaaattgtaatttcatataaata 2983698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 2927012 - 2927065
Alignment:
Q  323 taaaccttggttagaaaatggactaagatacgatttattgttacttgaaaatca 376  Q
    ||||||||||||||| |||||  ||||| ||||||||| |||||||||||||||    
T  2927012 taaaccttggttagataatggtataagacacgatttatggttacttgaaaatca 2927065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 323 - 376
Target Start/End: Complemental strand, 3004001 - 3003948
Alignment:
Q  323 taaaccttggttagaaaatggactaagatacgatttattgttacttgaaaatca 376  Q
    ||||||||||||||| |||||  ||||| ||||||||| |||||||||||||||    
T  3004001 taaaccttggttagataatggtataagaaacgatttatggttacttgaaaatca 3003948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 153
Target Start/End: Original strand, 2965366 - 2965397
Alignment:
Q  122 agcaacttgatcatgttgtattgttgttgaac 153  Q
    ||||||||||||||||||||||||||||||||    
T  2965366 agcaacttgatcatgttgtattgttgttgaac 2965397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 153
Target Start/End: Original strand, 2927956 - 2927985
Alignment:
Q  124 caacttgatcatgttgtattgttgttgaac 153  Q
    ||||||||||||||||||||||||||||||    
T  2927956 caacttgatcatgttgtattgttgttgaac 2927985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 153
Target Start/End: Original strand, 2986579 - 2986608
Alignment:
Q  124 caacttgatcatgttgtattgttgttgaac 153  Q
    ||||||||||||||||||||||||||||||    
T  2986579 caacttgatcatgttgtattgttgttgaac 2986608  T

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Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 176 - 302
Target Start/End: Original strand, 3338877 - 3339003
Alignment:
Q  176 cttggtcatctacatagattctatcttacctcatttcaaacgctgttattccgaaaccctaccattttctcatgatgatcttgttaagttaatcttaatc 275  Q
    ||||||| ||||| |||| |||||||||||| |||||||||| |||||||| |||  |||| |||||||| ||||| | |||||||||||||||||||||    
T  3338877 cttggtcttctacgtagagtctatcttacctgatttcaaacgttgttattcggaattcctaacattttctgatgataaacttgttaagttaatcttaatc 3338976  T
Q  276 gattcctgttttattattcaacttttt 302  Q
    |||||| ||||||| ||||||||||||    
T  3338977 gattccggttttataattcaacttttt 3339003  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 3339754 - 3339850
Alignment:
Q  1 taattattgctattagtattatcaaccaatgtacgttgtttgtttcaatggtttcattat---tttgtgttgtattagatcgaaattgtaatttcatat 96  Q
    ||||||||||| |||||||||| | | ||||||||||||||||||| ||| |||||||||   ||||||||| ||||||||||||||||||||| ||||    
T  3339754 taattattgctcttagtattattatc-aatgtacgttgtttgtttccatg-tttcattatctttttgtgttgcattagatcgaaattgtaattttatat 3339850  T

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Target: scaffold0024 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 43680 - 43551
Alignment:
Q  25 accaatgtacgttgtttgtttcaatggtttcattattttgtgt----tgta-ttagatcgaaattgtaatttcatataa--ataggtgttctgctaaaca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||    |||| |||||| ||||||||||||||||||||  |||||| |||||| |||||    
T  43680 accaatgtacgttgtttgtttcaatggtttcattattttgtgtgttgtgtaattagattgaaattgtaatttcatataaatataggtcttctgccaaaca 43581  T
Q  118 aacgagcaacttgatcatgttgtattgttg 147  Q
    ||  ||||||||| |||  || ||||||||    
T  43580 aaaaagcaacttggtcagattttattgttg 43551  T

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Target: scaffold0024; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 187 - 302
Target Start/End: Complemental strand, 35598 - 35480
Alignment:
Q  187 acatagattctatcttacctcatttcaaacgctgttattccgaaaccctaccattttctcatgatgat---cttgttaagttaatcttaatcgattcctg 283  Q
    ||||| ||||||||||| || |||||||| | |||||||| ||||||||| ||||| |||| |||||    ||||||||||||||||||||||||||| |    
T  35598 acatatattctatcttatctgatttcaaatgttgttattcggaaaccctatcatttcctcaggatgaagaacttgttaagttaatcttaatcgattccgg 35499  T
Q  284 ttttattattcaacttttt 302  Q
    |||||| ||||||||||||    
T  35498 ttttataattcaacttttt 35480  T

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Target: scaffold0024; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 34300 - 34257
Alignment:
Q  94 tataaataggtgttctgctaaacaaacgagcaacttgatcatgt 137  Q
    |||||||||||||||||||||| ||| |||||||||||||||||    
T  34300 tataaataggtgttctgctaaataaaagagcaacttgatcatgt 34257  T

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Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 164 - 281
Target Start/End: Original strand, 49618079 - 49618196
Alignment:
Q  164 aagtttaaacaccttggtcatctacatagattctatcttacctcatttcaaacgctgttattccgaaaccctaccattttctcatgatgatcttgttaag 263  Q
    |||||| ||||| ||| ||  |||||||||||| |||||| |||||||||| | || ||||||| ||||||||| |||| ||||||||||  ||||||||    
T  49618079 aagtttgaacacgttgttctgctacatagattccatcttatctcatttcaatcactcttattccaaaaccctacaatttactcatgatgaatttgttaag 49618178  T
Q  264 ttaatcttaatcgattcc 281  Q
    ||||||||||| ||||||    
T  49618179 ttaatcttaattgattcc 49618196  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 49619171 - 49619255
Alignment:
Q  25 accaatgtacgttgtttgtttcaatggtttcattat--tttgtgttgtattagatcgaaattgtaatttcatataaataggtgtt 107  Q
    |||||| ||||||||||||| |||||||||||||||  | | ||||||||||||| |||||| |||| | |||||||||||||||    
T  49619171 accaatttacgttgtttgttccaatggtttcattatcatgtttgttgtattagattgaaattctaatattatataaataggtgtt 49619255  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 49614205 - 49614267
Alignment:
Q  41 tgtttcaatggtttcattattttg--tgttgtattagatcgaaattgtaatttcatataaata 101  Q
    ||||||||||||||||||||||||  ||||||| ||||| ||||||| || ||||||||||||    
T  49614205 tgtttcaatggtttcattattttgcatgttgtactagattgaaattgcaacttcatataaata 49614267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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