View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17147_low_5 (Length: 295)
Name: NF17147_low_5
Description: NF17147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17147_low_5 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
| [»] chr7 (4 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 9080546 - 9080783
Alignment:
| Q |
8 |
cgaagaatatattcttctgattcataaaatttcatgcatgttatgttaccacttcaaaaaattcctatctacttttttgatttaacaaataatacaccca |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9080546 |
cgaacaatatattcttctgattcataaaatttcatgcatgt-----taccacttcaaaaaattcctatctacttttttgatttaacaaataatacaccca |
9080640 |
T |
|
| Q |
108 |
tgcatatatgttgaaatagcacatagaaatagtagtggttatgtctataacgtacaatgttcctttgagacattatatata--gagaggaagaggaagca |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||| ||| || |
|
|
| T |
9080641 |
tgcatatatgttgaaatagcacatagaaatagtagtggttatatctataacgtacaatgttcctttgagacattatatatagggagagggaga-gaaaca |
9080739 |
T |
|
| Q |
206 |
cattcaatatatgttcccaacaaaaacaagtataacatgttagg |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9080740 |
cattcaatatatgttcccaacaaaaacaagtataacatgttagg |
9080783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 2578822 - 2578854
Alignment:
| Q |
261 |
tgaggggagcctaggggaccgtccacatcgagg |
293 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
2578822 |
tgaggggagcctgggggaccgtccacatcgagg |
2578854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 31714849 - 31714805
Alignment:
| Q |
251 |
gttgggtcagtgaggggagcctaggggaccgtccacatcgaggct |
295 |
Q |
| |
|
||||||||| ||||||||| || || ||||||||||||||||||| |
|
|
| T |
31714849 |
gttgggtcattgaggggagtctgggagaccgtccacatcgaggct |
31714805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 6500632 - 6500587
Alignment:
| Q |
250 |
tgttgggtcagtgaggggagcctaggggaccgtccacatcgaggct |
295 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6500632 |
tgttgggtaagtgaggggagcctgggggaccgtccacatcgaggct |
6500587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 295
Target Start/End: Complemental strand, 6501002 - 6500959
Alignment:
| Q |
252 |
ttgggtcagtgaggggagcctaggggaccgtccacatcgaggct |
295 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6501002 |
ttgggtaagtgaggggagcctgggggaccgtccacatcgaggct |
6500959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 1028493 - 1028538
Alignment:
| Q |
250 |
tgttgggtcagtgaggggagcctaggggaccgtccacatcgaggct |
295 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
1028493 |
tgttgggtcactgaggggagctagggggaccgtccacatcgaggct |
1028538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 7518030 - 7517983
Alignment:
| Q |
248 |
ggtgttgggtcagtgaggggagcctaggggaccgtccacatcgaggct |
295 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| ||||||||||||| |
|
|
| T |
7518030 |
ggtgttgggtcactgaggggagccaaggggaccacccacatcgaggct |
7517983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 1085593 - 1085637
Alignment:
| Q |
250 |
tgttgggtcagtgaggggagcctaggggaccgtccacatcgaggct |
295 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
1085593 |
tgttgggtca-tgaggggagccagggggaccgtccacatcgaggct |
1085637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 30244533 - 30244489
Alignment:
| Q |
250 |
tgttgggtcagtgaggggagcctaggggaccgtccacatcgaggct |
295 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
30244533 |
tgttgggtca-tgaggggagcctgagggaccgtccacatcgaggct |
30244489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 30253751 - 30253707
Alignment:
| Q |
250 |
tgttgggtcagtgaggggagcctaggggaccgtccacatcgaggct |
295 |
Q |
| |
|
|||||||||| |||||||||||| |||||| ||||||||||||||| |
|
|
| T |
30253751 |
tgttgggtca-tgaggggagcctgggggacagtccacatcgaggct |
30253707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 22304376 - 22304330
Alignment:
| Q |
250 |
tgttgggtcagtgaggggagcctagggg-accgtccacatcgaggct |
295 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
22304376 |
tgttgggtcagtgaggggaagctagggggaccgtccacatcgaggct |
22304330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 41359467 - 41359512
Alignment:
| Q |
250 |
tgttgggtcagtgaggggagcctaggggaccgtccacatcgaggct |
295 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||||||| |||||| |
|
|
| T |
41359467 |
tgttgggtcagcgaggggagtctgggggaccgtccacattgaggct |
41359512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 45084617 - 45084576
Alignment:
| Q |
250 |
tgttgggtcagtgaggggagcctaggggaccgtccacatcgag |
292 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
45084617 |
tgttgggtca-tgagggaagcctaggggaccgtccacatcgag |
45084576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 44290800 - 44290845
Alignment:
| Q |
250 |
tgttgggtcagtgaggggagcctaggggaccgtccacatcgaggct |
295 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
44290800 |
tgttgggtcagtggggggagctcgggggaccgtccacatcgaggct |
44290845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 10246101 - 10246056
Alignment:
| Q |
250 |
tgttgggtcagtgaggggagcctaggggaccgtccacatcgaggct |
295 |
Q |
| |
|
||||||||||| ||||||||| | ||||| |||||||||||||||| |
|
|
| T |
10246101 |
tgttgggtcagcgaggggagcttgggggagcgtccacatcgaggct |
10246056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 36629418 - 36629374
Alignment:
| Q |
251 |
gttgggtcagtgaggggagcctaggggaccgtccacatcgaggct |
295 |
Q |
| |
|
||||||||| |||||||||| | ||||||||||||||||||||| |
|
|
| T |
36629418 |
gttgggtcattgaggggagcatgtgggaccgtccacatcgaggct |
36629374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 41283451 - 41283496
Alignment:
| Q |
250 |
tgttgggtcagtgaggggagcctaggggaccgtccacatcgaggct |
295 |
Q |
| |
|
|||||||| |||||||||||| | |||||||||||||||| ||||| |
|
|
| T |
41283451 |
tgttgggtaagtgaggggagcatgggggaccgtccacatcaaggct |
41283496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 41129159 - 41129127
Alignment:
| Q |
261 |
tgaggggagcctaggggaccgtccacatcgagg |
293 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
41129159 |
tgaggggagcctgggggaccgtccacatcgagg |
41129127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University