View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17148_high_1 (Length: 605)
Name: NF17148_high_1
Description: NF17148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17148_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 21 - 596
Target Start/End: Complemental strand, 54032826 - 54032248
Alignment:
| Q |
21 |
tccgagggacctgttagagacttactgcatataaactgcatgaaatttgtaaagatgaattcaaagtccatacttgaagattcccctctttgatcagtgc |
120 |
Q |
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| T |
54032826 |
tccgagggacctgttagagacttactgcatataaactgcatgaaatttgtaaaggtgaattcaaagtccatactcgaagattcccctctttgatcagtgc |
54032727 |
T |
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| Q |
121 |
aaatatagctgactgtattgtggcgaagagacacatccaaaaagtcgacaatatatgatccgggcaagatgaagaaatcggcacctgtgttgaaatttta |
220 |
Q |
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| T |
54032726 |
aaatatagctgactgtattgtggcgaagagacacatccaaaaagtcgacaatatatgatccgggcaagatgaagaaatcggcacctgtgttgaaatttta |
54032627 |
T |
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| Q |
221 |
atcaaatgtccattgatgaataataatcttgtcacctaaaagattattaattctggttttattaattttttacctgcatgatcatccaacatgaccaaaa |
320 |
Q |
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| T |
54032626 |
atcaaatgtccattgatgaataataatcttgtcacctaaaagattattaattctggttttattaattttttacctgcatgatcatccaacatgaccaaaa |
54032527 |
T |
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| Q |
321 |
aacactacttgctaagagcaatagacaacccagaatccaagtatcatctccacttgcagtgagatgtttggaatcaggaagaaagtactccatatgtaac |
420 |
Q |
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| T |
54032526 |
aacactacttgctaagagcaatagacaacccagaatccaagtatcatctccacttgcagtgagatgtttggaatcaggaagaaagaactccatatgtaac |
54032427 |
T |
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| Q |
421 |
agcttatttcctttgagaaatgccatggttaaggctccactgacacaacatattgttcctaatatctttgccacgtttcttaaacttcgaagattgattt |
520 |
Q |
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| T |
54032426 |
agcttatttcctttgagaaatgccatggttaaggctccactgacacaacatattgttcctaatatctttgccacgtttcttaaacttcgaagattgattt |
54032327 |
T |
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| Q |
521 |
tctcaaatctaatcattcaaacaccagaa---aatgtcattcattgaattttaagtaaacaaaacaaatattagtataa |
596 |
Q |
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| T |
54032326 |
tctcaaatctaatcattcaaacaccagaaaataatgtcattcatttaattttaagtaaacaaaacaaatattagtataa |
54032248 |
T |
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